| TF name | Position | PWM scan score |
| ArcA | 39-99 | 27.057 |
| CysB | 331-372 | 22.328 |
| OmpR | 338-357 | 18.170 |
| FNR | 293-314 | 17.411 |
| ModE | 39-65 | 15.267 |
| TorR | 198-207 | 14.494 |
| PhoB | 166-185 | 14.437 |
| GntR | 165-184 | 14.260 |
| NagC | 341-363 | 13.732 |
| Fis | 351-371 | 13.231 |
| CytR | 75-114 | 13.071 |
| GlpR | 298-317 | 13.044 |
| DeoR | 124-139 | 12.120 |
| CRP | 81-102 | 11.804 |
| Rob | 36-56 | 11.639 |
| TyrR | 70-91 | 11.475 |
| IHF | 131-143 | 11.408 |
| H-NS | 78-92 | 11.241 |
| PhoP | 300-316 | 11.144 |
| FhlA | 334-373 | 11.090 |
| PspF | 170-186 | 11.031 |
| Nac | 330-344 | 10.883 |
| LexA | 184-203 | 10.824 |
| CpxR | 302-316 | 10.824 |
| DnaA | 172-180 | 10.817 |
| ArgP | 294-306 | 10.784 |
| GadE | 46-65 | 10.768 |
| Lrp | 304-315 | 10.710 |
| Fur | 349-363 | 10.685 |
| Ada | 310-337 | 10.535 |
| MarA | 168-188 | 10.341 |
| OxyR | 40-84 | 10.324 |
| NorR | 92-108 | 10.131 |
| NarL | 298-304 | 9.444 |
| UlaR | 326-345 | 9.434 |
| FadR | 12-28 | 9.420 |
| ArgR | 197-212 | 9.245 |
| Mlc | 135-157 | 9.202 |
| GcvA | 333-361 | 9.065 |
| DcuR | 10-64 | 8.942 |
| IdnR | 160-175 | 8.864 |
| MalT | 323-332 | 8.764 |
| LacI | 154-174 | 8.624 |
| NarP | 313-319 | 8.575 |
| XylR | 104-121 | 8.044 |
| SoxS | 54-71 | 7.996 |
| AraC | 72-89 | 7.984 |
| PurR | 131-146 | 7.893 |
| RcsB | 76-89 | 7.888 |
| AgaR | 133-156 | 7.567 |
| GalR | 248-263 | 7.364 |
| GalS | 248-263 | 7.364 |
| RhaS | 229-245 | 7.283 |
| MetR | 125-148 | 6.722 |
| MetJ | 154-161 | 6.561 |
| UxuR | 43-60 | 5.099 |