| TF name | Position | PWM scan score |
| ArcA | 90-150 | 31.458 |
| NagC | 306-328 | 20.199 |
| FNR | 126-147 | 17.957 |
| DcuR | 6-60 | 17.863 |
| CytR | 214-253 | 17.729 |
| Fur | 45-59 | 17.365 |
| CpxR | 21-35 | 17.001 |
| AgaR | 4-27 | 16.857 |
| PhoP | 346-362 | 16.676 |
| Mlc | 304-326 | 16.578 |
| CysB | 346-387 | 16.466 |
| TyrR | 207-228 | 15.871 |
| PhoB | 258-277 | 14.994 |
| Nac | 40-54 | 14.824 |
| OxyR | 16-60 | 14.667 |
| IHF | 123-135 | 14.202 |
| CRP | 123-144 | 14.118 |
| DeoR | 156-171 | 14.037 |
| UlaR | 80-99 | 13.782 |
| OmpR | 234-253 | 13.596 |
| RcsB | 45-58 | 13.209 |
| H-NS | 339-353 | 13.148 |
| GadE | 119-138 | 13.120 |
| FhlA | 95-134 | 12.921 |
| MarA | 107-127 | 12.847 |
| ArgP | 82-94 | 12.118 |
| MetR | 251-274 | 11.983 |
| NorR | 122-138 | 11.823 |
| AraC | 45-62 | 11.653 |
| ModE | 24-50 | 11.442 |
| Fis | 342-362 | 11.273 |
| XylR | 296-313 | 11.234 |
| LexA | 213-232 | 10.781 |
| GlpR | 268-287 | 10.644 |
| Lrp | 234-245 | 10.399 |
| TorR | 116-125 | 10.329 |
| DnaA | 43-51 | 10.218 |
| IdnR | 186-201 | 10.214 |
| Rob | 126-146 | 10.212 |
| NarP | 91-97 | 9.543 |
| Ada | 22-49 | 9.239 |
| NarL | 46-52 | 9.129 |
| GcvA | 280-308 | 8.863 |
| PspF | 284-300 | 8.798 |
| FadR | 335-351 | 7.939 |
| UxuR | 267-284 | 7.607 |
| RhaS | 45-61 | 7.373 |
| LacI | 107-127 | 6.724 |
| MalT | 5-14 | 6.634 |
| MelR | 324-341 | 6.609 |
| ArgR | 347-362 | 6.479 |
| GntR | 121-140 | 6.298 |
| SoxS | 253-270 | 6.222 |
| PurR | 324-339 | 6.086 |
| NtrC | 263-279 | 5.809 |
| MetJ | 376-383 | 5.453 |
| CaiF | 293-337 | 5.405 |