| TF name | Position | PWM scan score |
| UlaR | 314-333 | 18.010 |
| FNR | 68-89 | 16.190 |
| ArgP | 234-246 | 15.484 |
| Nac | 304-318 | 15.109 |
| CRP | 305-326 | 14.984 |
| OmpR | 228-247 | 14.416 |
| GalR | 9-24 | 13.745 |
| GalS | 9-24 | 13.745 |
| H-NS | 374-388 | 13.591 |
| PhoB | 229-248 | 13.128 |
| DeoR | 2-17 | 12.931 |
| MetR | 329-352 | 12.738 |
| IHF | 30-42 | 12.041 |
| AgaR | 22-45 | 11.149 |
| Fis | 228-248 | 10.892 |
| GadE | 238-257 | 10.490 |
| RcsB | 230-243 | 10.444 |
| GlpR | 67-86 | 10.186 |
| NorR | 322-338 | 10.134 |
| LacI | 7-27 | 9.890 |
| MarA | 113-133 | 9.863 |
| Lrp | 71-82 | 9.772 |
| Rob | 226-246 | 9.676 |
| PhoP | 28-44 | 9.455 |
| NarL | 234-240 | 9.376 |
| SoxS | 227-244 | 8.976 |
| FhlA | 70-109 | 8.855 |
| XylR | 64-81 | 8.438 |
| Fur | 233-247 | 8.176 |
| TorR | 67-76 | 8.078 |
| OxyR | 206-250 | 8.075 |
| Ada | 85-112 | 8.047 |
| ArcA | 212-272 | 8.032 |
| ArgR | 235-250 | 7.784 |
| DnaA | 105-113 | 7.738 |
| AraC | 281-298 | 7.735 |
| NtrC | 223-239 | 7.676 |
| GntR | 215-234 | 7.672 |
| CytR | 98-137 | 7.495 |
| TyrR | 305-326 | 7.355 |
| UxuR | 367-384 | 7.063 |
| CysB | 348-389 | 6.518 |
| NagC | 106-128 | 6.433 |
| MetJ | 308-315 | 6.398 |
| NarP | 86-92 | 6.195 |
| CpxR | 30-44 | 6.154 |
| LexA | 68-87 | 6.022 |
| FadR | 260-276 | 5.970 |
| RhaS | 202-218 | 5.574 |