| TF name | Position | PWM scan score |
| ArcA | 335-395 | 28.348 |
| DcuR | 332-386 | 23.024 |
| Mlc | 343-365 | 22.432 |
| CysB | 271-312 | 22.339 |
| NagC | 345-367 | 18.895 |
| GadE | 266-285 | 18.389 |
| ModE | 284-310 | 18.062 |
| OmpR | 377-396 | 17.862 |
| AgaR | 341-364 | 17.035 |
| H-NS | 176-190 | 16.537 |
| UlaR | 349-368 | 16.401 |
| XylR | 273-290 | 16.375 |
| MetR | 265-288 | 16.293 |
| Fis | 178-198 | 16.031 |
| RcsB | 274-287 | 16.012 |
| CytR | 347-386 | 15.536 |
| IHF | 270-282 | 15.337 |
| FNR | 241-262 | 15.202 |
| TyrR | 273-294 | 14.806 |
| CRP | 374-395 | 13.534 |
| Fur | 354-368 | 13.340 |
| SoxS | 40-57 | 12.857 |
| ArgR | 270-285 | 12.615 |
| CpxR | 346-360 | 12.577 |
| GcvA | 276-304 | 12.224 |
| OxyR | 343-387 | 11.962 |
| PhoB | 21-40 | 11.946 |
| DeoR | 355-370 | 11.647 |
| TorR | 106-115 | 10.851 |
| Lrp | 244-255 | 10.811 |
| FadR | 61-77 | 10.794 |
| NtrC | 28-44 | 10.640 |
| FruR | 247-264 | 10.551 |
| UxuR | 370-387 | 10.384 |
| GlpR | 343-362 | 10.236 |
| PspF | 136-152 | 10.121 |
| ArgP | 322-334 | 9.941 |
| Nac | 262-276 | 9.937 |
| Ada | 235-262 | 9.296 |
| NorR | 234-250 | 9.137 |
| AraC | 374-391 | 9.096 |
| MarA | 361-381 | 8.850 |
| Rob | 326-346 | 8.816 |
| MelR | 3-20 | 8.624 |
| FhlA | 317-356 | 8.411 |
| PurR | 336-351 | 8.350 |
| NarL | 129-135 | 8.290 |
| IdnR | 21-36 | 7.978 |
| MetJ | 174-181 | 7.925 |
| PhoP | 231-247 | 7.923 |
| GntR | 276-295 | 7.472 |
| DnaA | 344-352 | 7.194 |
| GalR | 114-129 | 6.534 |
| GalS | 114-129 | 6.534 |
| LexA | 365-384 | 5.867 |
| NarP | 391-397 | 5.774 |
| MalT | 143-152 | 5.577 |
| RhaS | 293-309 | 5.566 |
| LacI | 360-380 | 5.307 |