| TF name | Position | PWM scan score |
| ArcA | 62-122 | 34.401 |
| GcvA | 346-374 | 22.670 |
| NagC | 258-280 | 21.732 |
| OxyR | 57-101 | 19.339 |
| CytR | 84-123 | 19.095 |
| CysB | 70-111 | 18.480 |
| CRP | 79-100 | 18.215 |
| DcuR | 323-377 | 17.984 |
| Nac | 78-92 | 17.476 |
| XylR | 368-385 | 16.994 |
| FNR | 82-103 | 16.547 |
| Mlc | 79-101 | 16.046 |
| OmpR | 84-103 | 15.978 |
| PhoB | 362-381 | 15.670 |
| AgaR | 361-384 | 15.639 |
| UlaR | 245-264 | 15.486 |
| GadE | 84-103 | 14.719 |
| H-NS | 267-281 | 14.509 |
| MetR | 240-263 | 13.835 |
| DeoR | 84-99 | 13.693 |
| IHF | 74-86 | 13.663 |
| CpxR | 371-385 | 13.524 |
| Fis | 207-227 | 13.344 |
| GntR | 94-113 | 13.093 |
| Ada | 62-89 | 12.882 |
| Fur | 68-82 | 12.467 |
| PhoP | 313-329 | 12.326 |
| NorR | 297-313 | 12.112 |
| LacI | 254-274 | 12.086 |
| SoxS | 103-120 | 12.082 |
| FhlA | 39-78 | 12.044 |
| ArgP | 114-126 | 11.754 |
| GlpR | 371-390 | 11.534 |
| IdnR | 194-209 | 11.453 |
| Lrp | 371-382 | 11.395 |
| ModE | 363-389 | 11.357 |
| Rob | 55-75 | 11.201 |
| MarA | 262-282 | 10.813 |
| UxuR | 242-259 | 10.733 |
| MelR | 88-105 | 10.577 |
| PspF | 291-307 | 10.353 |
| ArgR | 115-130 | 10.308 |
| NarL | 137-143 | 8.932 |
| RcsB | 205-218 | 8.874 |
| TorR | 204-213 | 8.402 |
| FruR | 192-209 | 8.237 |
| TyrR | 71-92 | 8.017 |
| NarP | 86-92 | 7.740 |
| AraC | 74-91 | 7.731 |
| MetJ | 337-344 | 7.677 |
| FadR | 200-216 | 7.452 |
| DnaA | 247-255 | 7.425 |
| GalR | 18-33 | 7.369 |
| GalS | 18-33 | 7.369 |
| RhaS | 8-24 | 7.043 |
| TrpR | 158-175 | 6.465 |
| PurR | 24-39 | 6.230 |
| NtrC | 94-110 | 5.808 |
| LexA | 16-35 | 5.331 |