| TF name | Position | PWM scan score |
| ArcA | 8-68 | 29.145 |
| OmpR | 216-235 | 22.279 |
| AgaR | 1-24 | 22.227 |
| NagC | 216-238 | 20.668 |
| CysB | 109-150 | 19.916 |
| ArgR | 228-243 | 18.392 |
| CRP | 218-239 | 18.132 |
| H-NS | 316-330 | 17.248 |
| GcvA | 108-136 | 16.912 |
| Nac | 125-139 | 16.791 |
| CytR | 80-119 | 16.554 |
| FNR | 258-279 | 16.086 |
| Fis | 18-38 | 15.004 |
| CpxR | 213-227 | 14.977 |
| DcuR | 126-180 | 14.720 |
| MetR | 84-107 | 14.478 |
| RcsB | 216-229 | 14.432 |
| NorR | 180-196 | 14.422 |
| IHF | 317-329 | 14.106 |
| OxyR | 195-239 | 13.814 |
| GadE | 123-142 | 13.715 |
| Fur | 278-292 | 13.568 |
| UlaR | 222-241 | 13.541 |
| PhoP | 164-180 | 13.134 |
| IdnR | 152-167 | 12.994 |
| Ada | 175-202 | 12.912 |
| ModE | 317-343 | 12.889 |
| GntR | 216-235 | 12.686 |
| PhoB | 106-125 | 12.353 |
| TyrR | 12-33 | 12.297 |
| ArgP | 235-247 | 12.240 |
| Lrp | 366-377 | 12.212 |
| AraC | 258-275 | 11.906 |
| PspF | 314-330 | 11.622 |
| Rob | 108-128 | 11.288 |
| DeoR | 188-203 | 11.225 |
| XylR | 132-149 | 11.084 |
| SoxS | 15-32 | 10.897 |
| TorR | 85-94 | 10.329 |
| Mlc | 95-117 | 10.304 |
| FruR | 286-303 | 9.652 |
| GlpR | 125-144 | 9.355 |
| MelR | 178-195 | 9.324 |
| MarA | 302-322 | 9.227 |
| UxuR | 236-253 | 9.195 |
| NarL | 276-282 | 9.087 |
| LacI | 136-156 | 8.433 |
| FadR | 312-328 | 8.147 |
| NarP | 350-356 | 7.740 |
| NtrC | 179-195 | 7.663 |
| LexA | 273-292 | 7.258 |
| MetJ | 214-221 | 5.992 |
| DnaA | 84-92 | 5.373 |