| TF name | Position | PWM scan score |
| ArcA | 330-390 | 32.879 |
| CysB | 118-159 | 21.246 |
| FNR | 355-376 | 20.009 |
| DcuR | 310-364 | 18.229 |
| CytR | 93-132 | 18.042 |
| NorR | 110-126 | 17.813 |
| NagC | 363-385 | 17.380 |
| ArgP | 241-253 | 16.495 |
| GcvA | 351-379 | 15.972 |
| OmpR | 289-308 | 15.570 |
| CRP | 127-148 | 15.478 |
| Mlc | 361-383 | 14.990 |
| AgaR | 228-251 | 14.842 |
| IHF | 333-345 | 14.798 |
| OxyR | 342-386 | 14.773 |
| UlaR | 136-155 | 14.392 |
| GadE | 356-375 | 14.316 |
| Nac | 310-324 | 14.279 |
| CpxR | 333-347 | 14.184 |
| PhoP | 362-378 | 13.801 |
| PhoB | 367-386 | 13.688 |
| Fis | 169-189 | 13.152 |
| Fur | 311-325 | 12.973 |
| MelR | 330-347 | 12.835 |
| UxuR | 197-214 | 12.428 |
| H-NS | 218-232 | 12.146 |
| RcsB | 327-340 | 11.907 |
| DeoR | 323-338 | 11.683 |
| TyrR | 139-160 | 11.645 |
| PspF | 123-139 | 11.256 |
| Lrp | 239-250 | 11.231 |
| SoxS | 362-379 | 11.187 |
| FadR | 364-380 | 10.925 |
| LacI | 95-115 | 10.632 |
| Rob | 92-112 | 10.552 |
| GntR | 92-111 | 10.283 |
| Ada | 299-326 | 10.240 |
| ModE | 100-126 | 10.175 |
| IdnR | 151-166 | 10.130 |
| XylR | 353-370 | 9.821 |
| MarA | 79-99 | 9.775 |
| CueR | 71-89 | 9.579 |
| GlpR | 87-106 | 9.443 |
| DnaA | 363-371 | 9.246 |
| NarL | 326-332 | 8.792 |
| TorR | 368-377 | 8.787 |
| AraC | 193-210 | 8.740 |
| GalS | 89-104 | 8.526 |
| GalR | 89-104 | 8.526 |
| RhaS | 109-125 | 8.300 |
| NarP | 101-107 | 8.227 |
| MetR | 293-316 | 8.124 |
| ArgR | 296-311 | 7.892 |
| MetJ | 193-200 | 7.677 |
| PurR | 89-104 | 7.289 |
| NtrC | 327-343 | 6.577 |
| FhlA | 287-326 | 6.299 |
| MalT | 48-57 | 6.267 |
| FruR | 361-378 | 5.401 |