| TF name | Position | PWM scan score |
| ArcA | 55-115 | 22.918 |
| FNR | 220-241 | 19.449 |
| GadE | 326-345 | 18.741 |
| GcvA | 231-259 | 18.308 |
| DeoR | 324-339 | 16.775 |
| OxyR | 223-267 | 16.009 |
| H-NS | 345-359 | 15.340 |
| OmpR | 235-254 | 15.173 |
| AgaR | 132-155 | 14.927 |
| PhoP | 72-88 | 14.522 |
| SoxS | 125-142 | 14.510 |
| Nac | 345-359 | 13.757 |
| GntR | 259-278 | 13.536 |
| MelR | 336-353 | 13.318 |
| MarA | 123-143 | 13.143 |
| Fis | 68-88 | 12.908 |
| MetR | 180-203 | 12.498 |
| XylR | 184-201 | 12.473 |
| PhoB | 264-283 | 12.293 |
| CpxR | 54-68 | 12.261 |
| TorR | 323-332 | 12.150 |
| CysB | 44-85 | 11.754 |
| IdnR | 117-132 | 11.745 |
| ArgR | 126-141 | 11.477 |
| Lrp | 321-332 | 11.440 |
| CRP | 89-110 | 11.198 |
| FruR | 241-258 | 10.868 |
| IHF | 226-238 | 10.786 |
| UlaR | 85-104 | 10.666 |
| Mlc | 329-351 | 10.211 |
| RcsB | 66-79 | 10.009 |
| MetJ | 8-15 | 9.980 |
| DnaA | 54-62 | 9.809 |
| CytR | 316-355 | 9.674 |
| TyrR | 244-265 | 9.420 |
| AraC | 56-73 | 9.408 |
| NagC | 324-346 | 9.233 |
| NarL | 13-19 | 8.685 |
| ModE | 56-82 | 8.529 |
| Rob | 65-85 | 8.504 |
| UxuR | 220-237 | 8.497 |
| FhlA | 290-329 | 8.475 |
| Ada | 1-28 | 7.896 |
| MalT | 46-55 | 7.741 |
| LexA | 162-181 | 7.687 |
| PspF | 233-249 | 7.660 |
| Fur | 371-385 | 7.603 |
| NarP | 131-137 | 7.489 |
| ArgP | 330-342 | 7.408 |
| GlpR | 45-64 | 7.354 |
| LacI | 290-310 | 7.291 |
| NorR | 13-29 | 6.112 |
| CaiF | 213-257 | 6.100 |
| DcuR | 52-106 | 5.883 |
| FadR | 77-93 | 5.552 |
| GalR | 241-256 | 5.079 |
| GalS | 241-256 | 5.079 |