| TF name | Position | PWM scan score |
| ArcA | 269-329 | 34.934 |
| OxyR | 210-254 | 25.291 |
| PhoP | 312-328 | 23.977 |
| FNR | 227-248 | 19.453 |
| CytR | 206-245 | 18.554 |
| OmpR | 302-321 | 18.276 |
| CysB | 277-318 | 17.648 |
| Mlc | 295-317 | 16.817 |
| PhoB | 319-338 | 16.812 |
| UlaR | 348-367 | 16.797 |
| NagC | 297-319 | 16.235 |
| GadE | 214-233 | 16.192 |
| PspF | 338-354 | 16.141 |
| GcvA | 332-360 | 15.364 |
| AgaR | 348-371 | 14.874 |
| IHF | 227-239 | 14.725 |
| Fis | 311-331 | 14.591 |
| RcsB | 297-310 | 14.508 |
| CRP | 318-339 | 14.021 |
| CpxR | 268-282 | 13.908 |
| H-NS | 338-352 | 13.329 |
| GntR | 93-112 | 13.326 |
| TyrR | 311-332 | 13.301 |
| DeoR | 311-326 | 12.541 |
| ArgR | 314-329 | 12.500 |
| UxuR | 339-356 | 12.395 |
| Nac | 295-309 | 11.823 |
| TorR | 211-220 | 11.647 |
| ArgP | 317-329 | 11.548 |
| Fur | 227-241 | 11.487 |
| ModE | 257-283 | 11.473 |
| Lrp | 315-326 | 10.850 |
| Rob | 313-333 | 10.730 |
| MarA | 306-326 | 10.647 |
| NorR | 226-242 | 10.309 |
| IdnR | 290-305 | 10.214 |
| XylR | 208-225 | 9.726 |
| AraC | 334-351 | 9.578 |
| MalT | 55-64 | 9.118 |
| DcuR | 206-260 | 8.969 |
| GlpR | 360-379 | 8.891 |
| Ada | 335-362 | 8.813 |
| SoxS | 356-373 | 8.786 |
| MelR | 243-260 | 8.709 |
| MetJ | 233-240 | 8.430 |
| LexA | 210-229 | 8.371 |
| NarL | 109-115 | 7.997 |
| NarP | 58-64 | 7.806 |
| FhlA | 301-340 | 7.706 |
| GalR | 223-238 | 7.678 |
| GalS | 223-238 | 7.678 |
| LacI | 152-172 | 7.412 |
| MetR | 306-329 | 7.372 |
| TrpR | 309-326 | 7.174 |
| FadR | 32-48 | 6.024 |
| PurR | 223-238 | 5.671 |
| DnaA | 214-222 | 5.474 |
| NtrC | 52-68 | 5.284 |