| TF name | Position | PWM scan score |
| ArcA | 238-298 | 29.003 |
| NagC | 332-354 | 23.066 |
| OmpR | 276-295 | 22.696 |
| Mlc | 168-190 | 22.109 |
| CysB | 86-127 | 22.045 |
| DeoR | 153-168 | 18.380 |
| GadE | 346-365 | 16.694 |
| H-NS | 346-360 | 16.063 |
| PhoB | 277-296 | 15.704 |
| Fur | 273-287 | 15.660 |
| GcvA | 328-356 | 15.184 |
| CytR | 257-296 | 14.848 |
| RcsB | 206-219 | 14.846 |
| OxyR | 242-286 | 14.694 |
| FhlA | 314-353 | 13.888 |
| Fis | 276-296 | 13.869 |
| XylR | 116-133 | 13.859 |
| CpxR | 228-242 | 13.611 |
| Rob | 217-237 | 13.456 |
| GlpR | 278-297 | 13.300 |
| PhoP | 274-290 | 13.244 |
| DnaA | 337-345 | 12.813 |
| CRP | 272-293 | 12.809 |
| MarA | 277-297 | 12.770 |
| FNR | 104-125 | 12.668 |
| LacI | 333-353 | 12.546 |
| AgaR | 303-326 | 12.108 |
| GntR | 276-295 | 11.587 |
| Nac | 271-285 | 11.578 |
| SoxS | 277-294 | 11.551 |
| ArgP | 285-297 | 11.357 |
| TyrR | 341-362 | 11.290 |
| IHF | 275-287 | 11.270 |
| ArgR | 272-287 | 10.461 |
| Lrp | 162-173 | 10.330 |
| ModE | 200-226 | 10.292 |
| MetR | 246-269 | 10.092 |
| NorR | 107-123 | 10.057 |
| DcuR | 250-304 | 9.889 |
| IdnR | 316-331 | 9.210 |
| TorR | 310-319 | 8.361 |
| LexA | 318-337 | 8.128 |
| PspF | 343-359 | 8.026 |
| UlaR | 323-342 | 7.980 |
| AraC | 160-177 | 7.676 |
| FadR | 61-77 | 7.665 |
| UxuR | 348-365 | 7.607 |
| PurR | 163-178 | 7.506 |
| NarP | 239-245 | 7.489 |
| NtrC | 342-358 | 7.428 |
| MetJ | 52-59 | 7.113 |
| NarL | 271-277 | 6.934 |
| MalT | 257-266 | 6.197 |
| MelR | 205-222 | 5.738 |
| RhaS | 273-289 | 5.333 |
| Ada | 293-320 | 5.321 |