| TF name | Position | PWM scan score |
| ArcA | 300-360 | 25.096 |
| GcvA | 370-398 | 22.103 |
| UlaR | 253-272 | 19.138 |
| CRP | 13-34 | 18.790 |
| FNR | 16-37 | 18.101 |
| OmpR | 374-393 | 17.241 |
| OxyR | 8-52 | 16.897 |
| CysB | 357-398 | 15.404 |
| AgaR | 255-278 | 15.206 |
| NagC | 320-342 | 14.663 |
| H-NS | 376-390 | 14.350 |
| MetR | 274-297 | 14.261 |
| CytR | 4-43 | 13.749 |
| NorR | 24-40 | 13.539 |
| Mlc | 21-43 | 12.913 |
| AraC | 47-64 | 12.810 |
| GlpR | 30-49 | 12.803 |
| IHF | 16-28 | 12.721 |
| GntR | 95-114 | 12.499 |
| PhoB | 256-275 | 12.265 |
| MarA | 256-276 | 11.742 |
| ArgR | 34-49 | 11.720 |
| Rob | 22-42 | 11.618 |
| Lrp | 142-153 | 11.467 |
| SoxS | 41-58 | 11.457 |
| GadE | 25-44 | 11.306 |
| Nac | 29-43 | 11.282 |
| Fur | 283-297 | 11.032 |
| Fis | 286-306 | 10.463 |
| NarL | 105-111 | 10.130 |
| RcsB | 266-279 | 9.700 |
| DeoR | 374-389 | 9.466 |
| PspF | 100-116 | 9.426 |
| Ada | 250-277 | 9.246 |
| ModE | 5-31 | 9.207 |
| PurR | 237-252 | 9.163 |
| MelR | 13-30 | 8.949 |
| XylR | 15-32 | 8.727 |
| PhoP | 269-285 | 8.707 |
| DcuR | 135-189 | 8.569 |
| TyrR | 325-346 | 8.524 |
| NarP | 242-248 | 8.509 |
| FruR | 370-387 | 8.384 |
| LacI | 317-337 | 8.255 |
| CpxR | 365-379 | 7.919 |
| ArgP | 14-26 | 7.773 |
| MetJ | 169-176 | 7.485 |
| CueR | 288-306 | 7.467 |
| DnaA | 24-32 | 7.425 |
| RhaS | 104-120 | 7.384 |
| TrpR | 358-375 | 6.751 |
| IdnR | 346-361 | 6.645 |
| NtrC | 277-293 | 6.343 |
| FadR | 352-368 | 6.154 |
| TorR | 160-169 | 6.035 |
| FhlA | 317-356 | 5.448 |