| TF name | Position | PWM scan score |
| ArcA | 236-296 | 25.506 |
| AgaR | 87-110 | 19.278 |
| CysB | 83-124 | 17.357 |
| UlaR | 85-104 | 16.713 |
| Mlc | 250-272 | 16.493 |
| IHF | 154-166 | 16.225 |
| CytR | 250-289 | 15.887 |
| Rob | 145-165 | 15.832 |
| FNR | 154-175 | 15.155 |
| OmpR | 91-110 | 15.057 |
| GadE | 360-379 | 14.816 |
| FhlA | 271-310 | 14.601 |
| Fur | 105-119 | 14.416 |
| Fis | 105-125 | 14.248 |
| CRP | 34-55 | 13.745 |
| Nac | 358-372 | 13.685 |
| ArgP | 195-207 | 13.632 |
| FadR | 114-130 | 13.425 |
| ModE | 260-286 | 13.227 |
| OxyR | 74-118 | 12.967 |
| H-NS | 33-47 | 12.659 |
| MelR | 319-336 | 12.589 |
| PhoP | 381-397 | 12.276 |
| Ada | 33-60 | 11.858 |
| MetR | 78-101 | 11.523 |
| PhoB | 79-98 | 11.512 |
| GntR | 17-36 | 11.474 |
| DeoR | 295-310 | 11.445 |
| XylR | 85-102 | 11.411 |
| LacI | 330-350 | 11.384 |
| PspF | 33-49 | 11.256 |
| NagC | 356-378 | 11.105 |
| RcsB | 89-102 | 11.060 |
| DnaA | 198-206 | 10.872 |
| TyrR | 151-172 | 10.858 |
| GcvA | 85-113 | 10.498 |
| TrpR | 290-307 | 10.142 |
| NorR | 304-320 | 10.134 |
| SoxS | 261-278 | 9.583 |
| NarL | 198-204 | 9.580 |
| GlpR | 105-124 | 9.463 |
| Lrp | 102-113 | 9.344 |
| ArgR | 28-43 | 9.220 |
| CpxR | 154-168 | 8.990 |
| NtrC | 148-164 | 8.742 |
| MarA | 73-93 | 8.562 |
| TorR | 359-368 | 8.466 |
| FruR | 373-390 | 8.462 |
| UxuR | 94-111 | 8.329 |
| MetJ | 101-108 | 7.710 |
| MalT | 151-160 | 6.922 |
| NarP | 172-178 | 6.781 |
| IdnR | 71-86 | 6.645 |
| AraC | 5-22 | 6.329 |
| GalS | 180-195 | 5.504 |
| GalR | 180-195 | 5.504 |