| TF name | Position | PWM scan score |
| ArcA | 304-364 | 26.928 |
| OxyR | 314-358 | 20.477 |
| AgaR | 302-325 | 20.316 |
| Fur | 301-315 | 19.231 |
| H-NS | 300-314 | 17.297 |
| RcsB | 304-317 | 16.501 |
| FNR | 144-165 | 15.998 |
| OmpR | 352-371 | 15.669 |
| GadE | 358-377 | 14.908 |
| CysB | 58-99 | 14.646 |
| GcvA | 306-334 | 14.632 |
| PhoB | 310-329 | 14.410 |
| ModE | 301-327 | 14.189 |
| CytR | 333-372 | 13.844 |
| IHF | 304-316 | 13.797 |
| NagC | 349-371 | 13.696 |
| XylR | 347-364 | 13.686 |
| MarA | 153-173 | 13.464 |
| DcuR | 294-348 | 12.988 |
| CpxR | 309-323 | 12.951 |
| Lrp | 306-317 | 12.720 |
| PspF | 95-111 | 12.656 |
| Mlc | 347-369 | 12.471 |
| GntR | 57-76 | 12.000 |
| Fis | 301-321 | 11.921 |
| SoxS | 295-312 | 11.823 |
| PhoP | 307-323 | 11.154 |
| CRP | 304-325 | 10.958 |
| Nac | 293-307 | 10.563 |
| Rob | 156-176 | 10.043 |
| AraC | 114-131 | 10.002 |
| PurR | 180-195 | 9.878 |
| ArgP | 319-331 | 9.753 |
| Ada | 167-194 | 9.692 |
| NarP | 86-92 | 9.680 |
| NarL | 303-309 | 9.444 |
| TorR | 288-297 | 9.287 |
| MelR | 73-90 | 9.230 |
| IdnR | 315-330 | 9.143 |
| UlaR | 304-323 | 9.092 |
| CueR | 89-107 | 8.729 |
| DnaA | 84-92 | 8.075 |
| MetR | 299-322 | 8.073 |
| GalS | 75-90 | 7.801 |
| GalR | 75-90 | 7.801 |
| GlpR | 350-369 | 7.774 |
| DeoR | 8-23 | 7.609 |
| LacI | 107-127 | 7.389 |
| ArgR | 146-161 | 7.189 |
| NorR | 350-366 | 7.096 |
| TyrR | 42-63 | 7.013 |
| RhaS | 335-351 | 6.792 |
| LexA | 317-336 | 6.700 |
| UxuR | 26-43 | 6.442 |
| MetJ | 198-205 | 6.414 |
| FhlA | 124-163 | 6.290 |
| MalT | 317-326 | 6.252 |
| NtrC | 345-361 | 5.829 |