| TF name | Position | PWM scan score |
| ArcA | 86-146 | 25.712 |
| CysB | 99-140 | 21.596 |
| OmpR | 266-285 | 18.618 |
| NagC | 304-326 | 17.709 |
| UlaR | 109-128 | 16.809 |
| CytR | 275-314 | 15.866 |
| OxyR | 130-174 | 15.764 |
| Nac | 109-123 | 15.491 |
| DcuR | 63-117 | 14.885 |
| MelR | 128-145 | 14.461 |
| FNR | 124-145 | 14.435 |
| AgaR | 106-129 | 14.234 |
| PhoB | 195-214 | 14.224 |
| Fis | 271-291 | 14.187 |
| H-NS | 269-283 | 13.529 |
| CpxR | 202-216 | 13.524 |
| Rob | 272-292 | 13.475 |
| XylR | 199-216 | 13.425 |
| Mlc | 122-144 | 13.037 |
| PhoP | 335-351 | 12.968 |
| IHF | 301-313 | 12.761 |
| Lrp | 298-309 | 12.705 |
| MetR | 62-85 | 12.405 |
| SoxS | 315-332 | 11.982 |
| GcvA | 333-361 | 11.966 |
| CRP | 202-223 | 11.821 |
| LacI | 318-338 | 11.213 |
| RcsB | 296-309 | 11.103 |
| ArgR | 371-386 | 10.871 |
| ModE | 194-220 | 10.764 |
| DeoR | 148-163 | 10.763 |
| Ada | 69-96 | 10.750 |
| IdnR | 331-346 | 10.214 |
| MetJ | 190-197 | 9.980 |
| ArgP | 297-309 | 9.930 |
| PspF | 117-133 | 9.819 |
| TorR | 18-27 | 9.465 |
| NarL | 163-169 | 9.376 |
| UxuR | 298-315 | 9.118 |
| TyrR | 299-320 | 9.022 |
| GntR | 123-142 | 8.377 |
| GadE | 149-168 | 7.893 |
| Fur | 120-134 | 7.838 |
| FadR | 70-86 | 7.823 |
| AraC | 117-134 | 7.761 |
| GalR | 239-254 | 7.575 |
| GalS | 239-254 | 7.575 |
| NarP | 99-105 | 7.325 |
| MarA | 124-144 | 7.008 |
| LexA | 378-397 | 6.685 |
| DnaA | 312-320 | 6.645 |
| GlpR | 123-142 | 6.332 |
| NorR | 264-280 | 6.290 |
| MalT | 265-274 | 5.958 |
| FruR | 310-327 | 5.933 |
| NtrC | 42-58 | 5.753 |