| TF name | Position | PWM scan score |
| ArcA | 292-352 | 25.712 |
| CysB | 305-346 | 21.596 |
| ModE | 69-95 | 17.924 |
| RcsB | 78-91 | 17.158 |
| UlaR | 315-334 | 16.809 |
| OxyR | 336-380 | 15.764 |
| Nac | 315-329 | 15.491 |
| DcuR | 269-323 | 14.885 |
| IdnR | 32-47 | 14.844 |
| MelR | 334-351 | 14.461 |
| FNR | 330-351 | 14.435 |
| AgaR | 312-335 | 14.234 |
| NagC | 316-338 | 14.095 |
| CytR | 289-328 | 13.592 |
| Mlc | 328-350 | 13.037 |
| MetR | 268-291 | 12.405 |
| OmpR | 314-333 | 12.294 |
| XylR | 328-345 | 11.972 |
| MetJ | 33-40 | 11.889 |
| IHF | 60-72 | 11.865 |
| PhoB | 72-91 | 11.801 |
| GcvA | 289-317 | 11.711 |
| Lrp | 77-88 | 11.630 |
| TyrR | 76-97 | 11.598 |
| H-NS | 278-292 | 11.556 |
| GntR | 63-82 | 11.465 |
| CRP | 329-350 | 11.161 |
| Rob | 310-330 | 11.012 |
| GadE | 56-75 | 10.832 |
| PhoP | 263-279 | 10.764 |
| DeoR | 354-369 | 10.763 |
| Ada | 275-302 | 10.750 |
| CpxR | 294-308 | 10.397 |
| NarL | 85-91 | 10.377 |
| Fis | 269-289 | 10.126 |
| PspF | 323-339 | 9.819 |
| TorR | 224-233 | 9.465 |
| SoxS | 358-375 | 8.922 |
| ArgP | 291-303 | 8.855 |
| ArgR | 364-379 | 8.692 |
| NtrC | 142-158 | 8.328 |
| AraC | 33-50 | 8.191 |
| GlpR | 65-84 | 8.118 |
| Fur | 326-340 | 7.838 |
| FadR | 276-292 | 7.823 |
| NarP | 180-186 | 7.806 |
| MarA | 330-350 | 7.008 |
| NorR | 142-158 | 6.743 |
| DnaA | 294-302 | 6.590 |
| LexA | 288-307 | 6.242 |
| UxuR | 1-18 | 6.187 |
| FruR | 301-318 | 5.615 |
| RhaS | 174-190 | 5.234 |