| TF name | Position | PWM scan score |
| ArcA | 333-393 | 35.301 |
| CysB | 299-340 | 23.085 |
| FNR | 307-328 | 20.230 |
| NagC | 313-335 | 20.046 |
| OmpR | 262-281 | 19.543 |
| GcvA | 369-397 | 18.766 |
| CaiF | 42-86 | 18.434 |
| Fur | 256-270 | 17.912 |
| Mlc | 304-326 | 17.824 |
| UlaR | 294-313 | 17.625 |
| PhoP | 257-273 | 17.232 |
| Fis | 256-276 | 16.821 |
| OxyR | 288-332 | 16.810 |
| CpxR | 309-323 | 16.798 |
| CytR | 303-342 | 16.572 |
| GadE | 359-378 | 16.496 |
| MetR | 268-291 | 16.395 |
| Rob | 354-374 | 16.027 |
| SoxS | 350-367 | 15.621 |
| CRP | 304-325 | 15.231 |
| MarA | 348-368 | 14.355 |
| AgaR | 367-390 | 13.806 |
| IHF | 299-311 | 13.581 |
| H-NS | 374-388 | 13.563 |
| ArgR | 258-273 | 13.228 |
| Nac | 254-268 | 13.137 |
| ArgP | 254-266 | 12.975 |
| ModE | 306-332 | 12.734 |
| DcuR | 303-357 | 12.461 |
| PhoB | 4-23 | 11.835 |
| Lrp | 374-385 | 11.764 |
| RcsB | 372-385 | 11.647 |
| IdnR | 319-334 | 11.265 |
| TyrR | 317-338 | 10.936 |
| UxuR | 326-343 | 10.911 |
| LexA | 351-370 | 10.396 |
| XylR | 306-323 | 10.279 |
| NtrC | 332-348 | 10.250 |
| DeoR | 380-395 | 10.052 |
| FhlA | 227-266 | 9.619 |
| GalS | 165-180 | 9.569 |
| GalR | 165-180 | 9.569 |
| MetJ | 278-285 | 9.447 |
| NarL | 257-263 | 9.376 |
| TorR | 306-315 | 9.337 |
| GntR | 262-281 | 9.179 |
| DnaA | 328-336 | 8.729 |
| MelR | 16-33 | 8.699 |
| AraC | 369-386 | 8.145 |
| PspF | 49-65 | 8.130 |
| Ada | 310-337 | 8.044 |
| RhaS | 327-343 | 7.764 |
| NorR | 292-308 | 7.257 |
| GlpR | 260-279 | 6.909 |
| FadR | 51-67 | 5.773 |
| MalT | 40-49 | 5.675 |
| NarP | 29-35 | 5.283 |