| TF name | Position | PWM scan score |
| ArcA | 287-347 | 34.952 |
| CytR | 174-213 | 24.915 |
| NagC | 297-319 | 23.755 |
| AgaR | 245-268 | 22.235 |
| PhoP | 355-371 | 20.719 |
| CysB | 240-281 | 18.714 |
| Mlc | 176-198 | 18.554 |
| OmpR | 298-317 | 18.542 |
| H-NS | 308-322 | 18.525 |
| ModE | 147-173 | 17.747 |
| TyrR | 258-279 | 17.052 |
| CRP | 347-368 | 16.957 |
| GadE | 235-254 | 16.805 |
| Fis | 288-308 | 16.753 |
| MarA | 302-322 | 16.219 |
| DeoR | 291-306 | 15.813 |
| GcvA | 300-328 | 15.549 |
| UlaR | 324-343 | 14.930 |
| FNR | 350-371 | 14.672 |
| RcsB | 147-160 | 14.603 |
| OxyR | 280-324 | 14.015 |
| Nac | 346-360 | 13.954 |
| Ada | 250-277 | 13.557 |
| IHF | 147-159 | 13.462 |
| IdnR | 351-366 | 13.434 |
| PhoB | 308-327 | 13.402 |
| ArgR | 357-372 | 13.212 |
| CaiF | 293-337 | 12.975 |
| Rob | 189-209 | 12.898 |
| CpxR | 179-193 | 12.710 |
| ArgP | 313-325 | 12.634 |
| DcuR | 315-369 | 12.572 |
| XylR | 145-162 | 12.462 |
| GlpR | 300-319 | 12.426 |
| FhlA | 293-332 | 12.071 |
| AraC | 350-367 | 11.759 |
| SoxS | 190-207 | 11.613 |
| Lrp | 245-256 | 11.097 |
| DnaA | 363-371 | 10.846 |
| TrpR | 19-36 | 10.716 |
| UxuR | 350-367 | 10.478 |
| Fur | 288-302 | 10.237 |
| NorR | 233-249 | 9.859 |
| LexA | 260-279 | 9.770 |
| NarL | 52-58 | 9.729 |
| NtrC | 379-395 | 9.543 |
| PspF | 138-154 | 9.453 |
| MetJ | 329-336 | 9.447 |
| MetR | 319-342 | 8.713 |
| NarP | 21-27 | 8.594 |
| GalR | 283-298 | 8.399 |
| GalS | 283-298 | 8.399 |
| FruR | 156-173 | 8.270 |
| LacI | 205-225 | 8.208 |
| FadR | 316-332 | 8.049 |
| MalT | 156-165 | 7.499 |
| TorR | 290-299 | 7.270 |
| RhaS | 288-304 | 6.678 |
| GntR | 285-304 | 6.664 |
| MelR | 308-325 | 5.431 |