| TF name | Position | PWM scan score |
| ArcA | 87-147 | 29.890 |
| Rob | 287-307 | 20.015 |
| NagC | 129-151 | 18.851 |
| OxyR | 16-60 | 18.753 |
| CysB | 145-186 | 18.108 |
| OmpR | 30-49 | 17.145 |
| CRP | 361-382 | 16.432 |
| H-NS | 85-99 | 16.284 |
| AgaR | 128-151 | 15.063 |
| Fis | 359-379 | 14.936 |
| CytR | 90-129 | 14.448 |
| Mlc | 303-325 | 14.407 |
| IHF | 136-148 | 14.246 |
| SoxS | 178-195 | 14.086 |
| FNR | 34-55 | 14.012 |
| MetR | 127-150 | 13.937 |
| PhoP | 126-142 | 13.864 |
| GntR | 287-306 | 13.725 |
| MarA | 98-118 | 13.703 |
| IdnR | 134-149 | 13.622 |
| XylR | 125-142 | 13.498 |
| CpxR | 253-267 | 13.187 |
| GadE | 91-110 | 12.879 |
| PspF | 84-100 | 12.683 |
| GcvA | 45-73 | 12.224 |
| ModE | 85-111 | 12.186 |
| DnaA | 215-223 | 12.185 |
| UlaR | 133-152 | 12.058 |
| GlpR | 378-397 | 12.057 |
| DcuR | 321-375 | 11.947 |
| DeoR | 37-52 | 11.715 |
| ArgP | 365-377 | 11.667 |
| RcsB | 42-55 | 11.412 |
| Fur | 159-173 | 11.228 |
| PhoB | 352-371 | 11.118 |
| CueR | 273-291 | 11.083 |
| Nac | 128-142 | 10.899 |
| FruR | 298-315 | 10.787 |
| FadR | 70-86 | 9.911 |
| Lrp | 93-104 | 9.869 |
| TyrR | 81-102 | 9.545 |
| NorR | 231-247 | 9.520 |
| ArgR | 135-150 | 9.444 |
| MetJ | 133-140 | 9.382 |
| LexA | 256-275 | 8.905 |
| NarP | 100-106 | 8.594 |
| Ada | 10-37 | 8.091 |
| TorR | 103-112 | 7.850 |
| PurR | 136-151 | 7.840 |
| NarL | 22-28 | 7.337 |
| AraC | 284-301 | 7.319 |
| GalS | 291-306 | 6.821 |
| GalR | 291-306 | 6.821 |
| UxuR | 322-339 | 6.704 |
| MelR | 367-384 | 6.566 |