| TF name | Position | PWM scan score |
| ArcA | 232-292 | 32.092 |
| CaiF | 263-307 | 25.598 |
| CysB | 263-304 | 24.317 |
| CytR | 59-98 | 21.576 |
| GadE | 257-276 | 18.591 |
| DcuR | 240-294 | 18.558 |
| OmpR | 60-79 | 18.326 |
| OxyR | 351-395 | 18.050 |
| CRP | 357-378 | 17.895 |
| RcsB | 230-243 | 16.275 |
| MarA | 39-59 | 16.225 |
| FNR | 58-79 | 15.905 |
| Mlc | 280-302 | 15.749 |
| CpxR | 283-297 | 15.700 |
| IHF | 369-381 | 15.535 |
| UlaR | 294-313 | 14.536 |
| AgaR | 246-269 | 13.785 |
| NagC | 363-385 | 13.547 |
| UxuR | 277-294 | 13.486 |
| ArgR | 183-198 | 13.280 |
| GcvA | 366-394 | 13.174 |
| H-NS | 368-382 | 12.772 |
| TyrR | 212-233 | 12.739 |
| Rob | 283-303 | 12.185 |
| Fis | 259-279 | 11.898 |
| PhoP | 234-250 | 11.617 |
| SoxS | 268-285 | 11.536 |
| Lrp | 232-243 | 11.463 |
| DeoR | 183-198 | 11.088 |
| Ada | 311-338 | 10.948 |
| Nac | 245-259 | 10.795 |
| GlpR | 29-48 | 10.525 |
| LexA | 324-343 | 10.189 |
| AraC | 224-241 | 9.872 |
| PspF | 320-336 | 9.792 |
| PhoB | 286-305 | 9.778 |
| ArgP | 234-246 | 9.550 |
| IdnR | 180-195 | 9.509 |
| MetR | 177-200 | 9.468 |
| NarL | 234-240 | 9.376 |
| DnaA | 66-74 | 9.246 |
| GntR | 59-78 | 9.016 |
| FadR | 146-162 | 8.994 |
| XylR | 46-63 | 8.994 |
| FhlA | 256-295 | 8.644 |
| Fur | 55-69 | 8.624 |
| TorR | 329-338 | 8.402 |
| ModE | 61-87 | 7.779 |
| MelR | 270-287 | 7.233 |
| TrpR | 84-101 | 6.829 |
| NorR | 75-91 | 6.401 |
| LacI | 94-114 | 6.324 |
| CueR | 205-223 | 6.067 |
| MetJ | 281-288 | 5.941 |
| NarP | 327-333 | 5.835 |
| GalS | 4-19 | 5.156 |
| GalR | 4-19 | 5.156 |