| TF name | Position | PWM scan score |
| ArcA | 131-191 | 37.831 |
| OxyR | 143-187 | 25.724 |
| DcuR | 33-87 | 22.063 |
| CytR | 276-315 | 21.576 |
| OmpR | 130-149 | 21.412 |
| CysB | 116-157 | 20.919 |
| GcvA | 188-216 | 17.903 |
| FNR | 166-187 | 17.883 |
| RcsB | 131-144 | 16.301 |
| MarA | 256-276 | 16.225 |
| PhoB | 156-175 | 16.107 |
| ArgR | 174-189 | 15.468 |
| Nac | 126-140 | 15.208 |
| IHF | 284-296 | 15.048 |
| UlaR | 130-149 | 14.979 |
| H-NS | 133-147 | 14.563 |
| ArgP | 129-141 | 14.437 |
| PhoP | 129-145 | 14.362 |
| GadE | 142-161 | 14.297 |
| CpxR | 75-89 | 13.715 |
| NagC | 213-235 | 13.490 |
| MelR | 203-220 | 13.148 |
| AgaR | 131-154 | 13.025 |
| Fis | 124-144 | 12.920 |
| ModE | 182-208 | 12.790 |
| CRP | 146-167 | 12.430 |
| Mlc | 136-158 | 12.143 |
| PspF | 181-197 | 11.511 |
| GntR | 208-227 | 11.465 |
| MetJ | 140-147 | 11.315 |
| LexA | 110-129 | 11.226 |
| TyrR | 73-94 | 11.136 |
| TorR | 127-136 | 10.978 |
| GlpR | 246-265 | 10.525 |
| Lrp | 130-141 | 10.238 |
| SoxS | 368-385 | 10.186 |
| GalR | 47-62 | 9.939 |
| GalS | 47-62 | 9.939 |
| Rob | 48-68 | 9.863 |
| XylR | 161-178 | 9.590 |
| NorR | 159-175 | 9.429 |
| NarL | 129-135 | 9.376 |
| DnaA | 283-291 | 9.246 |
| CaiF | 160-204 | 9.203 |
| FadR | 363-379 | 8.994 |
| Fur | 188-202 | 8.880 |
| DeoR | 174-189 | 8.830 |
| AraC | 217-234 | 7.937 |
| Ada | 115-142 | 7.829 |
| NarP | 77-83 | 7.762 |
| MetR | 168-191 | 7.352 |
| UxuR | 51-68 | 7.315 |
| FruR | 30-47 | 6.892 |
| TrpR | 301-318 | 6.829 |
| IdnR | 135-150 | 6.608 |
| MalT | 74-83 | 6.474 |
| LacI | 311-331 | 6.324 |