| TF name | Position | PWM scan score |
| ArcA | 212-272 | 19.734 |
| Fur | 207-221 | 17.481 |
| OxyR | 293-337 | 16.752 |
| Rob | 210-230 | 16.578 |
| CysB | 199-240 | 15.908 |
| MetR | 298-321 | 14.793 |
| CRP | 60-81 | 14.659 |
| FNR | 69-90 | 14.420 |
| Nac | 199-213 | 14.027 |
| LacI | 294-314 | 13.808 |
| IHF | 132-144 | 13.146 |
| OmpR | 353-372 | 13.119 |
| Fis | 122-142 | 12.857 |
| CytR | 106-145 | 12.687 |
| PhoB | 300-319 | 12.554 |
| PhoP | 194-210 | 12.446 |
| MelR | 351-368 | 12.366 |
| H-NS | 207-221 | 11.895 |
| AgaR | 134-157 | 11.888 |
| GcvA | 220-248 | 11.679 |
| IdnR | 216-231 | 11.641 |
| NagC | 116-138 | 11.578 |
| RcsB | 207-220 | 11.337 |
| MarA | 106-126 | 11.314 |
| ArgR | 348-363 | 10.917 |
| ModE | 369-395 | 10.567 |
| Mlc | 200-222 | 10.395 |
| FruR | 113-130 | 10.066 |
| TorR | 8-17 | 9.785 |
| SoxS | 191-208 | 9.497 |
| GlpR | 376-395 | 9.246 |
| TyrR | 42-63 | 9.170 |
| DeoR | 126-141 | 9.066 |
| PspF | 204-220 | 8.909 |
| UlaR | 299-318 | 8.903 |
| XylR | 365-382 | 8.889 |
| Lrp | 366-377 | 8.835 |
| GntR | 156-175 | 8.791 |
| AraC | 304-321 | 8.736 |
| ArgP | 202-214 | 8.711 |
| NarL | 371-377 | 8.685 |
| MetJ | 363-370 | 8.430 |
| DnaA | 115-123 | 8.280 |
| Ada | 152-179 | 8.181 |
| NorR | 123-139 | 8.160 |
| CueR | 231-249 | 8.031 |
| CpxR | 364-378 | 7.754 |
| DcuR | 131-185 | 7.672 |
| UxuR | 122-139 | 7.248 |
| GadE | 47-66 | 6.993 |
| LexA | 319-338 | 6.973 |
| NarP | 207-213 | 6.794 |
| PurR | 4-19 | 5.799 |