| TF name | Position | PWM scan score |
| ArcA | 54-114 | 32.159 |
| CysB | 74-115 | 22.626 |
| UxuR | 302-319 | 21.524 |
| OmpR | 88-107 | 18.690 |
| GcvA | 96-124 | 18.065 |
| FNR | 81-102 | 16.599 |
| Fis | 81-101 | 16.572 |
| PhoP | 82-98 | 16.014 |
| H-NS | 86-100 | 15.943 |
| CRP | 80-101 | 15.903 |
| Nac | 87-101 | 15.362 |
| Mlc | 284-306 | 15.328 |
| ArgR | 285-300 | 15.229 |
| NagC | 287-309 | 15.123 |
| GlpR | 182-201 | 14.737 |
| CytR | 58-97 | 14.690 |
| MetR | 244-267 | 13.824 |
| CpxR | 139-153 | 13.576 |
| XylR | 239-256 | 13.520 |
| DcuR | 97-151 | 13.435 |
| GntR | 333-352 | 13.250 |
| MarA | 96-116 | 13.162 |
| Ada | 68-95 | 12.714 |
| IHF | 139-151 | 12.610 |
| FruR | 294-311 | 12.568 |
| OxyR | 328-372 | 12.332 |
| SoxS | 260-277 | 12.102 |
| ArgP | 90-102 | 12.092 |
| PhoB | 357-376 | 12.048 |
| Lrp | 108-119 | 11.975 |
| IdnR | 73-88 | 11.641 |
| AgaR | 255-278 | 11.479 |
| GadE | 86-105 | 11.191 |
| RcsB | 360-373 | 11.167 |
| AraC | 159-176 | 11.107 |
| DnaA | 90-98 | 10.846 |
| TyrR | 109-130 | 10.809 |
| Fur | 138-152 | 10.548 |
| MelR | 78-95 | 10.074 |
| RhaS | 119-135 | 9.958 |
| TorR | 91-100 | 9.826 |
| NarP | 209-215 | 9.746 |
| Rob | 300-320 | 9.510 |
| PspF | 313-329 | 9.426 |
| NarL | 93-99 | 9.376 |
| UlaR | 76-95 | 9.115 |
| DeoR | 287-302 | 8.726 |
| NorR | 344-360 | 8.620 |
| TrpR | 207-224 | 8.314 |
| GalS | 337-352 | 8.240 |
| GalR | 337-352 | 8.240 |
| ModE | 138-164 | 7.241 |
| NtrC | 240-256 | 7.222 |
| LacI | 227-247 | 7.100 |
| CueR | 37-55 | 6.671 |
| LexA | 343-362 | 5.796 |
| MetJ | 264-271 | 5.609 |