| TF name | Position | PWM scan score |
| ArcA | 339-399 | 21.882 |
| UlaR | 361-380 | 18.169 |
| MetR | 356-379 | 16.602 |
| Fur | 240-254 | 16.515 |
| CytR | 205-244 | 15.894 |
| TyrR | 82-103 | 15.720 |
| DcuR | 267-321 | 15.643 |
| RcsB | 246-259 | 15.485 |
| GntR | 164-183 | 15.443 |
| CysB | 252-293 | 15.355 |
| Mlc | 231-253 | 15.024 |
| UxuR | 19-36 | 14.950 |
| CpxR | 73-87 | 14.750 |
| OxyR | 343-387 | 14.539 |
| PhoB | 358-377 | 14.362 |
| AraC | 173-190 | 14.341 |
| Ada | 133-160 | 13.835 |
| SoxS | 167-184 | 13.699 |
| NagC | 231-253 | 13.480 |
| Fis | 355-375 | 13.353 |
| GalS | 177-192 | 12.777 |
| GalR | 177-192 | 12.777 |
| AgaR | 143-166 | 12.560 |
| IHF | 26-38 | 12.559 |
| H-NS | 360-374 | 12.209 |
| Lrp | 23-34 | 12.176 |
| FNR | 92-113 | 11.910 |
| TorR | 288-297 | 11.575 |
| MarA | 349-369 | 11.298 |
| CRP | 220-241 | 10.898 |
| PhoP | 12-28 | 10.569 |
| IdnR | 152-167 | 10.459 |
| OmpR | 14-33 | 10.199 |
| MelR | 96-113 | 10.195 |
| PspF | 277-293 | 10.148 |
| GadE | 13-32 | 10.088 |
| GlpR | 210-229 | 9.953 |
| DeoR | 323-338 | 9.759 |
| ArgP | 25-37 | 9.738 |
| NarL | 80-86 | 9.333 |
| GcvA | 222-250 | 9.210 |
| LacI | 348-368 | 9.158 |
| Nac | 354-368 | 9.118 |
| NarP | 358-364 | 8.911 |
| ArgR | 14-29 | 8.729 |
| DnaA | 287-295 | 8.160 |
| ModE | 355-381 | 8.000 |
| PurR | 224-239 | 7.954 |
| FruR | 316-333 | 7.726 |
| XylR | 57-74 | 7.213 |
| NorR | 279-295 | 7.096 |
| Rob | 313-333 | 6.913 |
| FadR | 89-105 | 5.575 |
| MetJ | 237-244 | 5.575 |
| RhaS | 154-170 | 5.070 |
| MalT | 355-364 | 5.028 |