| TF name | Position | PWM scan score |
| ArcA | 318-378 | 24.777 |
| ArgP | 1-13 | 18.805 |
| OmpR | 366-385 | 18.704 |
| Nac | 367-381 | 16.591 |
| XylR | 208-225 | 15.857 |
| H-NS | 328-342 | 15.820 |
| Fur | 329-343 | 14.967 |
| Ada | 262-289 | 14.732 |
| Mlc | 76-98 | 14.615 |
| GcvA | 362-390 | 14.536 |
| NagC | 83-105 | 14.513 |
| CRP | 368-389 | 14.491 |
| FNR | 366-387 | 14.440 |
| Rob | 222-242 | 14.239 |
| CytR | 215-254 | 13.888 |
| DcuR | 325-379 | 13.374 |
| AgaR | 69-92 | 13.337 |
| ModE | 360-386 | 13.053 |
| IHF | 210-222 | 12.943 |
| GadE | 375-394 | 12.863 |
| MetR | 319-342 | 12.759 |
| PhoB | 215-234 | 12.589 |
| TyrR | 322-343 | 12.345 |
| Lrp | 368-379 | 12.202 |
| PspF | 326-342 | 11.978 |
| FadR | 195-211 | 11.966 |
| PhoP | 323-339 | 11.828 |
| Fis | 76-96 | 11.678 |
| ArgR | 367-382 | 11.616 |
| CpxR | 382-396 | 11.163 |
| MarA | 313-333 | 10.982 |
| NarP | 126-132 | 10.626 |
| OxyR | 197-241 | 10.611 |
| RcsB | 283-296 | 10.591 |
| MetJ | 27-34 | 9.980 |
| TorR | 71-80 | 9.840 |
| AraC | 72-89 | 9.836 |
| CysB | 325-366 | 9.835 |
| DnaA | 373-381 | 9.795 |
| UlaR | 318-337 | 9.578 |
| SoxS | 226-243 | 9.570 |
| NarL | 4-10 | 9.376 |
| DeoR | 372-387 | 9.211 |
| IdnR | 361-376 | 8.606 |
| GlpR | 248-267 | 7.767 |
| NorR | 109-125 | 7.626 |
| GntR | 366-385 | 7.504 |
| MelR | 277-294 | 7.382 |
| UxuR | 170-187 | 7.006 |
| MalT | 339-348 | 6.748 |
| RhaS | 108-124 | 5.701 |
| LacI | 329-349 | 5.173 |