| TF name | Position | PWM scan score |
| ArcA | 289-349 | 37.736 |
| OxyR | 284-328 | 26.603 |
| CysB | 308-349 | 24.293 |
| OmpR | 128-147 | 22.495 |
| DcuR | 219-273 | 21.187 |
| NagC | 66-88 | 18.894 |
| CytR | 235-274 | 17.941 |
| RcsB | 222-235 | 17.518 |
| PhoB | 312-331 | 17.500 |
| AgaR | 225-248 | 16.026 |
| Fis | 315-335 | 15.856 |
| Mlc | 276-298 | 15.850 |
| PhoP | 77-93 | 15.797 |
| H-NS | 322-336 | 15.556 |
| FNR | 277-298 | 15.379 |
| GntR | 296-315 | 15.080 |
| GlpR | 259-278 | 14.823 |
| GcvA | 316-344 | 14.556 |
| IHF | 316-328 | 14.422 |
| UlaR | 343-362 | 14.085 |
| TyrR | 165-186 | 14.014 |
| Rob | 78-98 | 13.791 |
| Ada | 209-236 | 13.530 |
| XylR | 335-352 | 12.884 |
| FruR | 64-81 | 12.708 |
| GadE | 273-292 | 12.646 |
| CRP | 267-288 | 12.527 |
| Lrp | 221-232 | 11.710 |
| CpxR | 233-247 | 11.704 |
| PspF | 265-281 | 11.595 |
| Fur | 222-236 | 11.339 |
| SoxS | 360-377 | 11.320 |
| ArgR | 140-155 | 11.221 |
| ModE | 55-81 | 11.197 |
| NorR | 163-179 | 11.192 |
| DeoR | 309-324 | 11.116 |
| FhlA | 228-267 | 10.941 |
| NtrC | 111-127 | 10.905 |
| MetR | 176-199 | 10.854 |
| Nac | 71-85 | 10.404 |
| IdnR | 260-275 | 10.053 |
| AraC | 175-192 | 9.564 |
| DnaA | 243-251 | 9.464 |
| MelR | 265-282 | 9.441 |
| NarL | 42-48 | 8.993 |
| TorR | 174-183 | 8.601 |
| ArgP | 314-326 | 8.468 |
| UxuR | 44-61 | 8.312 |
| MarA | 281-301 | 8.039 |
| LacI | 223-243 | 7.906 |
| NarP | 373-379 | 7.740 |
| MetJ | 41-48 | 7.462 |
| GalR | 293-308 | 6.251 |
| GalS | 293-308 | 6.251 |
| FadR | 159-175 | 6.120 |
| RhaS | 305-321 | 5.573 |
| PurR | 293-308 | 5.558 |