| TF name | Position | PWM scan score |
| ArcA | 57-117 | 37.736 |
| OxyR | 52-96 | 26.603 |
| CysB | 76-117 | 24.293 |
| GcvA | 299-327 | 19.891 |
| OmpR | 89-108 | 19.572 |
| CytR | 3-42 | 17.941 |
| PhoB | 80-99 | 17.500 |
| NagC | 124-146 | 16.169 |
| FNR | 318-339 | 16.038 |
| Fis | 83-103 | 15.856 |
| Mlc | 44-66 | 15.850 |
| H-NS | 90-104 | 15.556 |
| PhoP | 77-93 | 15.301 |
| GntR | 64-83 | 15.080 |
| RcsB | 4-17 | 14.826 |
| GlpR | 27-46 | 14.823 |
| ArgR | 321-336 | 14.622 |
| IHF | 84-96 | 14.422 |
| DcuR | 28-82 | 14.321 |
| UlaR | 111-130 | 14.085 |
| AgaR | 305-328 | 13.637 |
| XylR | 103-120 | 12.884 |
| ModE | 318-344 | 12.673 |
| GadE | 41-60 | 12.646 |
| CRP | 35-56 | 12.527 |
| TyrR | 161-182 | 12.050 |
| CpxR | 1-15 | 11.704 |
| PspF | 33-49 | 11.595 |
| Rob | 4-24 | 11.594 |
| SoxS | 128-145 | 11.320 |
| DeoR | 77-92 | 11.116 |
| MelR | 162-179 | 10.801 |
| Nac | 310-324 | 10.705 |
| Lrp | 309-320 | 10.612 |
| FruR | 14-31 | 10.447 |
| Ada | 102-129 | 10.347 |
| NorR | 344-360 | 10.309 |
| IdnR | 28-43 | 10.053 |
| ArgP | 313-325 | 9.970 |
| MetJ | 246-253 | 9.765 |
| DnaA | 11-19 | 9.464 |
| Fur | 306-320 | 9.410 |
| NarL | 324-330 | 9.376 |
| FadR | 261-277 | 8.957 |
| MarA | 289-309 | 8.877 |
| MetR | 292-315 | 8.620 |
| AraC | 306-323 | 8.471 |
| TrpR | 313-330 | 8.262 |
| UxuR | 80-97 | 8.121 |
| LacI | 38-58 | 7.805 |
| NarP | 141-147 | 7.740 |
| TorR | 170-179 | 7.699 |
| FhlA | 287-326 | 7.313 |
| GalS | 327-342 | 6.736 |
| GalR | 327-342 | 6.736 |
| RhaS | 73-89 | 5.573 |
| PurR | 61-76 | 5.558 |
| CueR | 349-367 | 5.550 |