| TF name | Position | PWM scan score |
| ArcA | 308-368 | 30.720 |
| CysB | 312-353 | 22.243 |
| FNR | 290-311 | 20.850 |
| OxyR | 311-355 | 20.789 |
| OmpR | 332-351 | 19.527 |
| MetR | 305-328 | 19.287 |
| Nac | 324-338 | 17.363 |
| GcvA | 358-386 | 16.603 |
| MelR | 225-242 | 16.493 |
| CytR | 320-359 | 15.687 |
| Mlc | 327-349 | 15.643 |
| PhoB | 346-365 | 15.587 |
| H-NS | 333-347 | 15.532 |
| NagC | 322-344 | 15.113 |
| GadE | 306-325 | 14.157 |
| Fis | 217-237 | 13.960 |
| UlaR | 124-143 | 13.848 |
| CRP | 375-396 | 12.987 |
| IHF | 299-311 | 12.575 |
| ArgR | 342-357 | 12.085 |
| DcuR | 90-144 | 11.880 |
| XylR | 105-122 | 11.876 |
| ModE | 350-376 | 11.715 |
| RcsB | 133-146 | 11.348 |
| Fur | 127-141 | 11.343 |
| CpxR | 331-345 | 10.885 |
| DnaA | 298-306 | 10.817 |
| AgaR | 348-371 | 10.670 |
| Rob | 97-117 | 10.670 |
| GlpR | 177-196 | 10.595 |
| NarL | 305-311 | 10.377 |
| AraC | 311-328 | 9.827 |
| DeoR | 362-377 | 9.659 |
| GntR | 291-310 | 9.648 |
| TorR | 115-124 | 9.531 |
| Lrp | 343-354 | 9.504 |
| ArgP | 341-353 | 9.406 |
| SoxS | 337-354 | 9.206 |
| IdnR | 351-366 | 9.153 |
| TyrR | 287-308 | 9.034 |
| MarA | 205-225 | 8.968 |
| PspF | 303-319 | 8.637 |
| PhoP | 304-320 | 8.282 |
| Ada | 343-370 | 8.185 |
| MalT | 275-284 | 8.175 |
| RhaS | 350-366 | 7.920 |
| NorR | 102-118 | 7.079 |
| LacI | 351-371 | 6.257 |
| UxuR | 75-92 | 6.170 |
| FadR | 232-248 | 5.742 |
| NarP | 346-352 | 5.708 |
| GalR | 95-110 | 5.225 |
| GalS | 95-110 | 5.225 |