| TF name | Position | PWM scan score |
| ArcA | 324-384 | 26.347 |
| CysB | 341-382 | 20.208 |
| OxyR | 354-398 | 19.690 |
| H-NS | 317-331 | 18.049 |
| MarA | 51-71 | 17.776 |
| GcvA | 159-187 | 17.249 |
| GlpR | 50-69 | 16.998 |
| NagC | 96-118 | 16.559 |
| FhlA | 222-261 | 16.027 |
| CRP | 42-63 | 15.856 |
| DcuR | 324-378 | 15.818 |
| CytR | 350-389 | 15.798 |
| UlaR | 360-379 | 15.361 |
| OmpR | 380-399 | 14.053 |
| Nac | 372-386 | 13.657 |
| AgaR | 355-378 | 13.591 |
| SoxS | 234-251 | 12.830 |
| GadE | 40-59 | 12.392 |
| DnaA | 87-95 | 12.185 |
| MelR | 6-23 | 12.085 |
| IHF | 247-259 | 12.042 |
| FNR | 371-392 | 11.980 |
| UxuR | 85-102 | 11.703 |
| Lrp | 301-312 | 11.379 |
| Fis | 323-343 | 11.370 |
| ArgP | 322-334 | 10.920 |
| RcsB | 247-260 | 10.903 |
| PhoB | 331-350 | 10.638 |
| TyrR | 5-26 | 10.269 |
| AraC | 2-19 | 10.006 |
| MetR | 352-375 | 9.943 |
| CpxR | 377-391 | 9.780 |
| Mlc | 372-394 | 9.636 |
| ArgR | 320-335 | 9.610 |
| NarL | 342-348 | 9.580 |
| Fur | 60-74 | 9.524 |
| IdnR | 294-309 | 9.143 |
| XylR | 33-50 | 9.081 |
| ModE | 241-267 | 9.011 |
| PspF | 93-109 | 8.919 |
| PurR | 137-152 | 8.852 |
| GntR | 109-128 | 8.641 |
| FruR | 334-351 | 8.346 |
| PhoP | 381-397 | 7.961 |
| NarP | 250-256 | 7.806 |
| FadR | 48-64 | 7.708 |
| TorR | 379-388 | 7.219 |
| Rob | 123-143 | 7.133 |
| Ada | 349-376 | 7.114 |
| DeoR | 272-287 | 7.081 |
| MalT | 220-229 | 6.816 |
| RhaS | 60-76 | 6.681 |
| NtrC | 143-159 | 6.619 |
| NorR | 99-115 | 6.196 |
| GalS | 61-76 | 5.843 |
| GalR | 61-76 | 5.843 |
| LacI | 177-197 | 5.512 |