| TF name | Position | PWM scan score |
| ArcA | 260-320 | 26.745 |
| PspF | 149-165 | 20.187 |
| CysB | 302-343 | 20.163 |
| CytR | 3-42 | 19.704 |
| PhoP | 209-225 | 17.703 |
| MetR | 320-343 | 17.063 |
| UlaR | 5-24 | 16.111 |
| GalS | 157-172 | 15.736 |
| GalR | 157-172 | 15.736 |
| Ada | 69-96 | 15.249 |
| FNR | 361-382 | 14.726 |
| AgaR | 203-226 | 14.392 |
| Mlc | 118-140 | 14.379 |
| RcsB | 205-218 | 14.296 |
| NagC | 249-271 | 14.286 |
| MarA | 313-333 | 13.952 |
| GadE | 317-336 | 13.945 |
| H-NS | 84-98 | 13.686 |
| IHF | 33-45 | 13.658 |
| XylR | 359-376 | 13.156 |
| ModE | 74-100 | 13.037 |
| CRP | 136-157 | 12.885 |
| Fis | 142-162 | 12.795 |
| AraC | 78-95 | 12.687 |
| TorR | 207-216 | 12.480 |
| TyrR | 291-312 | 12.116 |
| LexA | 157-176 | 12.055 |
| Lrp | 128-139 | 11.821 |
| DeoR | 364-379 | 11.497 |
| OmpR | 121-140 | 11.433 |
| Rob | 178-198 | 11.407 |
| DcuR | 270-324 | 11.353 |
| GlpR | 119-138 | 11.284 |
| GntR | 358-377 | 10.734 |
| UxuR | 139-156 | 10.733 |
| ArgP | 84-96 | 10.636 |
| ArgR | 316-331 | 10.470 |
| PhoB | 148-167 | 10.026 |
| SoxS | 137-154 | 9.765 |
| IdnR | 191-206 | 9.680 |
| Fur | 152-166 | 9.649 |
| DnaA | 119-127 | 9.559 |
| CpxR | 81-95 | 9.304 |
| LacI | 335-355 | 9.252 |
| Nac | 242-256 | 8.695 |
| MelR | 292-309 | 8.627 |
| NorR | 180-196 | 8.459 |
| GcvA | 296-324 | 8.388 |
| PurR | 157-172 | 8.118 |
| OxyR | 19-63 | 8.096 |
| MetJ | 253-260 | 7.386 |
| FadR | 377-393 | 7.153 |
| NarP | 93-99 | 7.078 |
| NtrC | 198-214 | 6.870 |
| RhaS | 43-59 | 6.787 |
| NarL | 261-267 | 6.730 |
| FhlA | 284-323 | 6.099 |