| TF name | Position | PWM scan score |
| ArcA | 208-268 | 19.419 |
| CysB | 207-248 | 16.087 |
| FruR | 289-306 | 14.582 |
| OmpR | 200-219 | 14.467 |
| ModE | 366-392 | 14.069 |
| PhoP | 251-267 | 13.826 |
| PspF | 257-273 | 13.754 |
| IHF | 293-305 | 13.494 |
| NorR | 283-299 | 11.645 |
| Fis | 203-223 | 11.331 |
| MarA | 372-392 | 11.262 |
| Nac | 256-270 | 11.252 |
| AgaR | 245-268 | 10.495 |
| RcsB | 147-160 | 10.465 |
| H-NS | 203-217 | 10.375 |
| CytR | 275-314 | 10.330 |
| PhoB | 211-230 | 10.325 |
| DeoR | 207-222 | 10.313 |
| Lrp | 152-163 | 9.508 |
| UlaR | 117-136 | 9.479 |
| FNR | 258-279 | 9.304 |
| GntR | 267-286 | 9.114 |
| GadE | 350-369 | 9.078 |
| Fur | 215-229 | 8.931 |
| XylR | 4-21 | 8.929 |
| CRP | 246-267 | 8.899 |
| GlpR | 202-221 | 8.890 |
| ArgR | 353-368 | 8.611 |
| LexA | 186-205 | 8.600 |
| Ada | 240-267 | 8.514 |
| TyrR | 254-275 | 8.382 |
| UxuR | 192-209 | 8.329 |
| CpxR | 334-348 | 8.323 |
| ArgP | 213-225 | 8.291 |
| GalR | 265-280 | 8.246 |
| GalS | 265-280 | 8.246 |
| Mlc | 339-361 | 8.162 |
| NagC | 231-253 | 8.071 |
| FadR | 210-226 | 8.037 |
| TorR | 257-266 | 8.037 |
| Rob | 149-169 | 7.882 |
| GcvA | 283-311 | 7.800 |
| NarP | 152-158 | 7.762 |
| NarL | 259-265 | 7.680 |
| MelR | 212-229 | 7.668 |
| RhaS | 264-280 | 7.508 |
| NtrC | 320-336 | 7.482 |
| AraC | 282-299 | 7.349 |
| MetR | 238-261 | 7.135 |
| SoxS | 279-296 | 6.906 |
| OxyR | 325-369 | 6.789 |
| MetJ | 363-370 | 6.776 |
| DnaA | 252-260 | 6.457 |
| MalT | 111-120 | 6.202 |