| TF name | Position | PWM scan score |
| OmpR | 373-392 | 17.938 |
| IdnR | 19-34 | 13.004 |
| DnaA | 203-211 | 12.185 |
| Ada | 156-183 | 11.240 |
| FNR | 20-41 | 10.911 |
| FadR | 249-265 | 10.646 |
| ArcA | 303-363 | 10.491 |
| PhoB | 296-315 | 10.161 |
| UxuR | 110-127 | 10.115 |
| UlaR | 273-292 | 9.529 |
| GcvA | 369-397 | 9.448 |
| CysB | 348-389 | 9.171 |
| OxyR | 215-259 | 9.151 |
| Nac | 378-392 | 9.144 |
| MarA | 253-273 | 9.122 |
| Fis | 376-396 | 9.048 |
| PhoP | 58-74 | 9.048 |
| IHF | 307-319 | 9.011 |
| ModE | 316-342 | 8.884 |
| MelR | 327-344 | 8.855 |
| SoxS | 327-344 | 8.771 |
| LacI | 254-274 | 8.745 |
| DeoR | 153-168 | 8.600 |
| RcsB | 170-183 | 8.509 |
| NarL | 45-51 | 8.290 |
| ArgP | 108-120 | 8.185 |
| TorR | 120-129 | 8.159 |
| NorR | 355-371 | 8.076 |
| GadE | 380-399 | 8.017 |
| GlpR | 260-279 | 7.817 |
| H-NS | 376-390 | 7.776 |
| ArgR | 165-180 | 7.599 |
| Lrp | 123-134 | 7.241 |
| MetJ | 340-347 | 7.113 |
| NarP | 10-16 | 6.195 |
| MetR | 161-184 | 6.124 |
| PspF | 146-162 | 5.894 |
| CRP | 378-399 | 5.891 |
| Rob | 217-237 | 5.798 |
| LexA | 377-396 | 5.782 |
| CpxR | 338-352 | 5.684 |
| GntR | 229-248 | 5.318 |
| NtrC | 84-100 | 5.223 |