| TF name | Position | PWM scan score |
| ArcA | 310-370 | 30.662 |
| CysB | 317-358 | 24.208 |
| AgaR | 121-144 | 21.229 |
| GadE | 134-153 | 17.391 |
| DcuR | 264-318 | 17.235 |
| Ada | 116-143 | 16.921 |
| FNR | 134-155 | 16.466 |
| H-NS | 57-71 | 16.035 |
| GcvA | 318-346 | 15.115 |
| Fur | 35-49 | 14.555 |
| XylR | 130-147 | 14.302 |
| Rob | 167-187 | 14.208 |
| ArgP | 331-343 | 13.415 |
| Lrp | 167-178 | 13.339 |
| RcsB | 168-181 | 12.828 |
| CytR | 251-290 | 12.731 |
| Fis | 129-149 | 12.526 |
| LexA | 311-330 | 12.513 |
| NagC | 336-358 | 12.183 |
| UlaR | 313-332 | 12.105 |
| OmpR | 134-153 | 11.995 |
| Mlc | 329-351 | 11.979 |
| PhoP | 317-333 | 11.767 |
| DeoR | 275-290 | 11.741 |
| MetR | 295-318 | 11.589 |
| OxyR | 102-146 | 11.468 |
| CRP | 318-339 | 11.326 |
| IHF | 319-331 | 11.235 |
| GalS | 12-27 | 11.142 |
| GalR | 12-27 | 11.142 |
| ModE | 124-150 | 11.007 |
| CpxR | 319-333 | 10.749 |
| PhoB | 60-79 | 10.708 |
| TyrR | 128-149 | 10.645 |
| FadR | 285-301 | 10.603 |
| PurR | 165-180 | 10.474 |
| MalT | 89-98 | 10.313 |
| NorR | 40-56 | 10.312 |
| MelR | 57-74 | 10.272 |
| Nac | 4-18 | 9.888 |
| ArgR | 33-48 | 9.833 |
| DnaA | 4-12 | 9.747 |
| SoxS | 195-212 | 9.734 |
| NarL | 172-178 | 9.580 |
| TorR | 131-140 | 9.465 |
| PspF | 55-71 | 9.295 |
| GntR | 336-355 | 8.750 |
| MarA | 161-181 | 8.360 |
| NarP | 70-76 | 8.031 |
| AraC | 362-379 | 7.961 |
| GlpR | 334-353 | 7.605 |
| NtrC | 365-381 | 7.034 |
| RhaS | 263-279 | 6.652 |
| MetJ | 178-185 | 6.627 |
| IdnR | 205-220 | 6.346 |
| UxuR | 283-300 | 6.177 |
| LacI | 35-55 | 5.777 |
| FhlA | 262-301 | 5.387 |