| TF name | Position | PWM scan score |
| ArcA | 281-341 | 21.677 |
| CysB | 308-349 | 18.432 |
| NagC | 29-51 | 17.618 |
| AgaR | 312-335 | 16.297 |
| UxuR | 178-195 | 14.742 |
| UlaR | 123-142 | 14.574 |
| MetR | 158-181 | 14.432 |
| TyrR | 297-318 | 14.415 |
| Fis | 126-146 | 14.163 |
| IHF | 314-326 | 13.746 |
| OmpR | 122-141 | 13.701 |
| FNR | 305-326 | 13.634 |
| CpxR | 358-372 | 13.516 |
| RcsB | 299-312 | 13.357 |
| Lrp | 301-312 | 12.818 |
| Nac | 303-317 | 12.604 |
| ArgR | 63-78 | 12.310 |
| GadE | 301-320 | 11.867 |
| CRP | 230-251 | 11.839 |
| ModE | 117-143 | 11.478 |
| H-NS | 65-79 | 11.463 |
| FhlA | 131-170 | 11.216 |
| AraC | 117-134 | 11.106 |
| DcuR | 111-165 | 10.986 |
| MarA | 66-86 | 10.975 |
| CytR | 24-63 | 10.859 |
| TorR | 322-331 | 10.851 |
| OxyR | 305-349 | 10.490 |
| Rob | 40-60 | 10.298 |
| Fur | 167-181 | 10.163 |
| PhoB | 293-312 | 10.034 |
| GcvA | 226-254 | 9.940 |
| GlpR | 336-355 | 9.914 |
| SoxS | 263-280 | 9.567 |
| DeoR | 263-278 | 8.989 |
| PhoP | 263-279 | 8.871 |
| IdnR | 285-300 | 8.787 |
| PspF | 235-251 | 8.728 |
| NarL | 13-19 | 8.545 |
| DnaA | 191-199 | 8.492 |
| XylR | 38-55 | 8.447 |
| Mlc | 47-69 | 8.202 |
| Ada | 26-53 | 8.077 |
| ArgP | 385-397 | 7.950 |
| NorR | 178-194 | 7.710 |
| NarP | 167-173 | 7.489 |
| FadR | 318-334 | 6.605 |
| FruR | 38-55 | 6.458 |
| GntR | 131-150 | 6.347 |
| MalT | 209-218 | 6.267 |
| RhaS | 48-64 | 6.238 |
| LacI | 245-265 | 5.797 |
| MelR | 334-351 | 5.788 |
| GalR | 315-330 | 5.713 |
| GalS | 315-330 | 5.713 |
| MetJ | 311-318 | 5.433 |
| NtrC | 299-315 | 5.053 |