| TF name | Position | PWM scan score |
| ArcA | 72-132 | 22.537 |
| MelR | 370-387 | 17.898 |
| FNR | 100-121 | 17.374 |
| OmpR | 214-233 | 16.615 |
| PhoB | 114-133 | 15.248 |
| Fis | 372-392 | 15.085 |
| CytR | 103-142 | 15.082 |
| H-NS | 105-119 | 14.801 |
| Nac | 349-363 | 14.123 |
| DeoR | 299-314 | 13.861 |
| NagC | 124-146 | 13.437 |
| RcsB | 178-191 | 13.089 |
| Mlc | 182-204 | 13.063 |
| ArgR | 353-368 | 12.776 |
| TyrR | 173-194 | 12.503 |
| CpxR | 185-199 | 12.152 |
| GlpR | 115-134 | 12.121 |
| GadE | 366-385 | 12.120 |
| CysB | 88-129 | 11.581 |
| CRP | 97-118 | 11.175 |
| Lrp | 280-291 | 11.035 |
| MarA | 100-120 | 10.697 |
| PhoP | 38-54 | 10.588 |
| GcvA | 285-313 | 10.499 |
| OxyR | 339-383 | 10.453 |
| PspF | 113-129 | 10.373 |
| NorR | 285-301 | 10.309 |
| Rob | 91-111 | 10.220 |
| CueR | 25-43 | 10.183 |
| FruR | 193-210 | 10.129 |
| UlaR | 243-262 | 9.859 |
| Fur | 242-256 | 9.772 |
| XylR | 194-211 | 9.576 |
| IHF | 116-128 | 9.555 |
| NarL | 355-361 | 9.333 |
| AraC | 345-362 | 9.241 |
| DcuR | 78-132 | 8.922 |
| GntR | 248-267 | 8.494 |
| UxuR | 179-196 | 8.282 |
| LacI | 229-249 | 7.825 |
| TorR | 360-369 | 7.655 |
| SoxS | 239-256 | 7.605 |
| MalT | 317-326 | 7.240 |
| DnaA | 359-367 | 7.194 |
| MetR | 186-209 | 6.930 |
| GalS | 100-115 | 6.677 |
| GalR | 100-115 | 6.677 |
| ModE | 242-268 | 6.418 |
| ArgP | 228-240 | 6.112 |
| IdnR | 195-210 | 5.940 |
| LexA | 127-146 | 5.662 |
| RhaS | 199-215 | 5.645 |
| PurR | 191-206 | 5.526 |
| Ada | 262-289 | 5.247 |
| AgaR | 354-377 | 5.150 |
| FhlA | 201-240 | 5.026 |