| TF name | Position | PWM scan score |
| CRP | 260-281 | 16.280 |
| PhoP | 37-53 | 15.637 |
| FNR | 263-284 | 14.848 |
| ArcA | 334-394 | 14.456 |
| H-NS | 333-347 | 14.057 |
| RcsB | 107-120 | 13.016 |
| RhaS | 125-141 | 12.511 |
| TorR | 213-222 | 12.289 |
| NorR | 109-125 | 12.273 |
| MetJ | 11-18 | 11.615 |
| CpxR | 331-345 | 11.452 |
| GadE | 214-233 | 10.920 |
| Lrp | 330-341 | 10.700 |
| Nac | 212-226 | 10.346 |
| Fur | 266-280 | 10.232 |
| Fis | 134-154 | 10.048 |
| MarA | 261-281 | 10.026 |
| IHF | 371-383 | 9.800 |
| OmpR | 333-352 | 9.443 |
| SoxS | 37-54 | 9.431 |
| MelR | 144-161 | 9.236 |
| UlaR | 337-356 | 9.219 |
| ArgP | 271-283 | 9.068 |
| OxyR | 105-149 | 9.051 |
| Ada | 143-170 | 8.936 |
| GntR | 258-277 | 8.818 |
| IdnR | 342-357 | 8.401 |
| DeoR | 353-368 | 8.258 |
| PhoB | 368-387 | 7.962 |
| TyrR | 46-67 | 7.934 |
| XylR | 48-65 | 7.914 |
| NarL | 351-357 | 7.884 |
| AgaR | 333-356 | 7.861 |
| GcvA | 361-389 | 7.774 |
| ArgR | 46-61 | 7.697 |
| UxuR | 335-352 | 7.315 |
| Rob | 331-351 | 7.264 |
| PspF | 276-292 | 6.864 |
| MalT | 80-89 | 6.762 |
| AraC | 306-323 | 6.644 |
| NarP | 40-46 | 6.464 |
| GlpR | 262-281 | 6.396 |
| LexA | 262-281 | 6.082 |
| FadR | 332-348 | 5.771 |
| DnaA | 247-255 | 5.511 |
| ModE | 125-151 | 5.389 |