| TF name | Position | PWM scan score |
| ArcA | 9-69 | 29.828 |
| FNR | 105-126 | 18.652 |
| NagC | 108-130 | 17.365 |
| CytR | 287-326 | 16.557 |
| CysB | 311-352 | 16.238 |
| RcsB | 229-242 | 16.008 |
| GadE | 20-39 | 15.981 |
| GntR | 105-124 | 15.387 |
| OmpR | 33-52 | 14.758 |
| AgaR | 325-348 | 14.510 |
| Fis | 111-131 | 14.248 |
| IdnR | 363-378 | 14.149 |
| GlpR | 29-48 | 14.102 |
| TorR | 194-203 | 13.898 |
| GalR | 3-18 | 13.672 |
| GalS | 3-18 | 13.672 |
| AraC | 195-212 | 13.399 |
| PhoB | 87-106 | 13.135 |
| OxyR | 61-105 | 13.058 |
| H-NS | 75-89 | 13.032 |
| IHF | 40-52 | 12.641 |
| Nac | 169-183 | 12.249 |
| XylR | 29-46 | 11.998 |
| PhoP | 283-299 | 11.916 |
| CRP | 21-42 | 11.870 |
| Ada | 213-240 | 11.579 |
| Fur | 66-80 | 11.418 |
| CpxR | 53-67 | 11.407 |
| DnaA | 193-201 | 11.366 |
| Lrp | 33-44 | 11.318 |
| SoxS | 144-161 | 11.268 |
| MetR | 193-216 | 10.938 |
| ArgP | 201-213 | 10.743 |
| UxuR | 37-54 | 10.723 |
| ArgR | 97-112 | 10.639 |
| MarA | 270-290 | 10.636 |
| Mlc | 59-81 | 10.538 |
| FhlA | 105-144 | 10.470 |
| LacI | 8-28 | 10.303 |
| ModE | 180-206 | 10.229 |
| NtrC | 59-75 | 10.045 |
| UlaR | 297-316 | 9.833 |
| NarL | 172-178 | 9.729 |
| PurR | 3-18 | 9.668 |
| PspF | 7-23 | 9.614 |
| NorR | 74-90 | 9.520 |
| Rob | 33-53 | 9.516 |
| MetJ | 63-70 | 9.382 |
| DcuR | 330-384 | 9.076 |
| RhaS | 210-226 | 9.037 |
| GcvA | 113-141 | 8.914 |
| TyrR | 69-90 | 8.765 |
| FadR | 345-361 | 8.191 |
| FruR | 286-303 | 7.940 |
| NarP | 101-107 | 7.762 |
| DeoR | 293-308 | 6.842 |
| CueR | 141-159 | 6.594 |
| LexA | 23-42 | 6.482 |