| TF name | Position | PWM scan score |
| ArcA | 5-65 | 25.567 |
| OxyR | 5-49 | 23.006 |
| CysB | 23-64 | 21.699 |
| DcuR | 22-76 | 20.005 |
| AgaR | 135-158 | 19.290 |
| Fur | 81-95 | 19.219 |
| GlpR | 224-243 | 17.735 |
| CytR | 1-40 | 17.519 |
| NagC | 6-28 | 16.377 |
| Fis | 148-168 | 16.287 |
| GadE | 149-168 | 16.225 |
| PhoB | 77-96 | 15.934 |
| CRP | 150-171 | 15.663 |
| PhoP | 152-168 | 15.630 |
| ArgR | 341-356 | 14.605 |
| FhlA | 206-245 | 13.654 |
| UlaR | 285-304 | 13.359 |
| OmpR | 77-96 | 12.964 |
| AraC | 28-45 | 12.874 |
| SoxS | 333-350 | 12.775 |
| Mlc | 4-26 | 12.635 |
| RcsB | 34-47 | 12.473 |
| XylR | 24-41 | 12.363 |
| FNR | 153-174 | 12.260 |
| Nac | 23-37 | 11.706 |
| IdnR | 94-109 | 11.641 |
| MelR | 345-362 | 11.562 |
| H-NS | 230-244 | 11.554 |
| MetR | 276-299 | 11.526 |
| IHF | 93-105 | 11.426 |
| DeoR | 7-22 | 11.153 |
| GntR | 291-310 | 11.002 |
| TyrR | 141-162 | 10.972 |
| MarA | 225-245 | 10.812 |
| CpxR | 364-378 | 10.762 |
| NorR | 29-45 | 10.487 |
| Lrp | 156-167 | 10.121 |
| LacI | 175-195 | 9.950 |
| DnaA | 276-284 | 9.747 |
| Rob | 197-217 | 9.415 |
| UxuR | 137-154 | 9.279 |
| ModE | 39-65 | 9.055 |
| TorR | 353-362 | 9.050 |
| PspF | 101-117 | 8.909 |
| GcvA | 133-161 | 8.588 |
| FadR | 59-75 | 8.238 |
| NarL | 82-88 | 7.839 |
| ArgP | 103-115 | 7.284 |
| MalT | 324-333 | 6.938 |
| Ada | 278-305 | 6.405 |
| GalS | 319-334 | 5.920 |
| GalR | 319-334 | 5.920 |
| PurR | 194-209 | 5.830 |
| FruR | 373-390 | 5.393 |
| LexA | 14-33 | 5.290 |