| TF name | Position | PWM scan score |
| ArcA | 337-397 | 33.171 |
| CysB | 197-238 | 25.035 |
| GadE | 372-391 | 18.138 |
| CpxR | 25-39 | 17.774 |
| OmpR | 365-384 | 17.559 |
| ArgR | 244-259 | 16.686 |
| Nac | 64-78 | 16.656 |
| CytR | 343-382 | 16.416 |
| H-NS | 26-40 | 15.820 |
| TorR | 256-265 | 15.719 |
| OxyR | 341-385 | 15.474 |
| DcuR | 22-76 | 15.006 |
| Rob | 249-269 | 14.783 |
| AgaR | 244-267 | 14.048 |
| GcvA | 220-248 | 14.026 |
| UlaR | 65-84 | 13.958 |
| TyrR | 357-378 | 13.920 |
| FNR | 139-160 | 13.899 |
| Fis | 214-234 | 13.853 |
| SoxS | 371-388 | 13.701 |
| Ada | 343-370 | 13.369 |
| ModE | 213-239 | 13.250 |
| PhoP | 247-263 | 13.227 |
| DeoR | 25-40 | 13.146 |
| MarA | 357-377 | 13.091 |
| CRP | 355-376 | 12.880 |
| RcsB | 353-366 | 12.508 |
| Lrp | 65-76 | 12.335 |
| PhoB | 333-352 | 11.989 |
| Mlc | 97-119 | 11.677 |
| NagC | 312-334 | 11.226 |
| Fur | 236-250 | 11.198 |
| IHF | 188-200 | 11.006 |
| ArgP | 31-43 | 10.977 |
| DnaA | 70-78 | 10.660 |
| NorR | 197-213 | 10.648 |
| LexA | 255-274 | 10.384 |
| UxuR | 203-220 | 10.293 |
| CaiF | 217-261 | 10.141 |
| XylR | 151-168 | 10.120 |
| MetR | 294-317 | 9.757 |
| PspF | 245-261 | 9.520 |
| NarL | 366-372 | 9.444 |
| GntR | 221-240 | 9.345 |
| PurR | 341-356 | 8.964 |
| GlpR | 366-385 | 8.887 |
| LacI | 368-388 | 8.584 |
| MelR | 278-295 | 8.477 |
| RhaS | 217-233 | 8.192 |
| FhlA | 314-353 | 7.728 |
| NtrC | 62-78 | 7.564 |
| MalT | 133-142 | 7.438 |
| IdnR | 58-73 | 7.434 |
| AraC | 350-367 | 7.236 |
| NarP | 117-123 | 6.879 |
| FruR | 342-359 | 6.805 |
| MetJ | 192-199 | 6.245 |
| GalS | 218-233 | 5.660 |
| GalR | 218-233 | 5.660 |