| TF name | Position | PWM scan score |
| ArcA | 321-381 | 24.530 |
| OxyR | 319-363 | 17.451 |
| Fis | 175-195 | 15.859 |
| UlaR | 166-185 | 15.683 |
| FruR | 293-310 | 15.415 |
| H-NS | 324-338 | 15.184 |
| CytR | 156-195 | 15.137 |
| OmpR | 314-333 | 14.852 |
| ModE | 325-351 | 13.945 |
| CRP | 69-90 | 13.594 |
| CpxR | 220-234 | 12.966 |
| ArgP | 152-164 | 12.911 |
| RcsB | 325-338 | 12.904 |
| MelR | 118-135 | 12.562 |
| IHF | 218-230 | 12.512 |
| CysB | 334-375 | 12.493 |
| FNR | 169-190 | 12.444 |
| GcvA | 83-111 | 11.833 |
| FhlA | 339-378 | 11.830 |
| PhoP | 165-181 | 11.741 |
| DeoR | 203-218 | 11.470 |
| LexA | 200-219 | 11.386 |
| NagC | 315-337 | 11.247 |
| GadE | 153-172 | 11.032 |
| Fur | 169-183 | 11.008 |
| Rob | 73-93 | 10.165 |
| NorR | 168-184 | 10.148 |
| Nac | 320-334 | 10.083 |
| Lrp | 172-183 | 10.060 |
| TyrR | 340-361 | 9.803 |
| GalS | 237-252 | 9.618 |
| GalR | 237-252 | 9.618 |
| GntR | 178-197 | 9.611 |
| NarL | 327-333 | 9.444 |
| DcuR | 196-250 | 9.200 |
| UxuR | 326-343 | 9.034 |
| FadR | 367-383 | 8.777 |
| Mlc | 153-175 | 8.607 |
| DnaA | 247-255 | 8.413 |
| AgaR | 320-343 | 8.258 |
| GlpR | 153-172 | 8.246 |
| AraC | 325-342 | 8.108 |
| NarP | 142-148 | 8.031 |
| MetJ | 232-239 | 7.986 |
| MarA | 272-292 | 7.968 |
| ArgR | 321-336 | 7.895 |
| MetR | 17-40 | 7.875 |
| SoxS | 319-336 | 7.858 |
| PspF | 325-341 | 7.388 |
| XylR | 198-215 | 7.330 |
| PhoB | 379-398 | 7.113 |
| TorR | 244-253 | 7.071 |
| Ada | 151-178 | 6.728 |
| RhaS | 69-85 | 6.512 |
| NtrC | 122-138 | 6.046 |
| LacI | 235-255 | 5.935 |
| MalT | 11-20 | 5.765 |
| PurR | 272-287 | 5.576 |
| TrpR | 324-341 | 5.495 |
| IdnR | 91-106 | 5.396 |