| TF name | Position | PWM scan score |
| ArcA | 240-300 | 34.327 |
| CysB | 207-248 | 22.150 |
| OxyR | 235-279 | 21.893 |
| OmpR | 301-320 | 20.392 |
| AgaR | 211-234 | 19.343 |
| DcuR | 193-247 | 17.927 |
| CytR | 211-250 | 16.920 |
| CRP | 223-244 | 16.682 |
| TrpR | 357-374 | 16.491 |
| NagC | 222-244 | 16.402 |
| GntR | 249-268 | 16.054 |
| ArgP | 266-278 | 15.632 |
| UxuR | 267-284 | 15.447 |
| ArgR | 260-275 | 15.209 |
| FNR | 219-240 | 14.549 |
| XylR | 360-377 | 14.418 |
| TyrR | 311-332 | 14.400 |
| Fur | 268-282 | 14.366 |
| Mlc | 225-247 | 14.127 |
| CpxR | 300-314 | 14.019 |
| GcvA | 148-176 | 13.888 |
| Fis | 227-247 | 13.827 |
| RcsB | 146-159 | 13.787 |
| MetR | 116-139 | 13.419 |
| PhoP | 231-247 | 13.210 |
| IHF | 295-307 | 12.979 |
| UlaR | 146-165 | 12.919 |
| Rob | 361-381 | 12.893 |
| PhoB | 264-283 | 12.649 |
| Nac | 233-247 | 12.531 |
| TorR | 234-243 | 12.471 |
| MarA | 191-211 | 12.439 |
| GadE | 115-134 | 12.336 |
| DnaA | 319-327 | 12.065 |
| Ada | 206-233 | 11.821 |
| Lrp | 151-162 | 11.395 |
| H-NS | 364-378 | 11.209 |
| IdnR | 332-347 | 11.124 |
| ModE | 143-169 | 10.977 |
| SoxS | 252-269 | 10.062 |
| NarL | 279-285 | 9.580 |
| PspF | 223-239 | 9.520 |
| NarP | 274-280 | 9.455 |
| MetJ | 8-15 | 9.451 |
| NorR | 267-283 | 8.976 |
| DeoR | 359-374 | 8.764 |
| AraC | 258-275 | 8.630 |
| MalT | 292-301 | 8.114 |
| GlpR | 363-382 | 8.034 |
| FruR | 360-377 | 7.637 |
| NtrC | 358-374 | 7.064 |
| LacI | 304-324 | 6.996 |
| MelR | 148-165 | 6.888 |
| CaiF | 268-312 | 6.592 |
| FadR | 21-37 | 5.818 |
| RhaS | 246-262 | 5.370 |