| TF name | Position | PWM scan score |
| ArcA | 196-256 | 22.774 |
| Mlc | 207-229 | 20.395 |
| CysB | 178-219 | 19.078 |
| ArgP | 209-221 | 17.201 |
| GcvA | 231-259 | 16.501 |
| SoxS | 94-111 | 14.494 |
| CytR | 201-240 | 14.102 |
| FNR | 168-189 | 14.053 |
| ModE | 229-255 | 13.302 |
| RcsB | 250-263 | 13.017 |
| NagC | 240-262 | 12.945 |
| Nac | 128-142 | 12.888 |
| CRP | 238-259 | 12.292 |
| UlaR | 174-193 | 12.189 |
| XylR | 185-202 | 11.669 |
| PhoP | 168-184 | 11.578 |
| Fur | 196-210 | 11.490 |
| Lrp | 252-263 | 11.420 |
| Fis | 241-261 | 11.049 |
| IHF | 178-190 | 10.953 |
| H-NS | 225-239 | 10.941 |
| MarA | 254-274 | 10.521 |
| Ada | 161-188 | 10.431 |
| OmpR | 235-254 | 10.384 |
| TyrR | 327-348 | 10.159 |
| AraC | 232-249 | 10.111 |
| MetJ | 196-203 | 9.765 |
| NarL | 207-213 | 9.580 |
| NarP | 217-223 | 9.521 |
| Rob | 208-228 | 9.303 |
| OxyR | 191-235 | 9.163 |
| DnaA | 194-202 | 9.103 |
| GalR | 250-265 | 9.018 |
| GalS | 250-265 | 9.018 |
| PurR | 55-70 | 8.922 |
| FhlA | 276-315 | 8.791 |
| TorR | 326-335 | 8.728 |
| AgaR | 309-332 | 8.503 |
| ArgR | 252-267 | 8.192 |
| DcuR | 84-138 | 8.015 |
| FadR | 79-95 | 7.759 |
| LacI | 182-202 | 7.741 |
| PspF | 111-127 | 7.519 |
| PhoB | 228-247 | 7.487 |
| DeoR | 327-342 | 7.284 |
| GlpR | 255-274 | 7.132 |
| NorR | 129-145 | 7.082 |
| MetR | 221-244 | 6.819 |
| GadE | 321-340 | 6.795 |
| LexA | 200-219 | 6.757 |
| MelR | 229-246 | 6.692 |
| UxuR | 140-157 | 6.445 |
| CpxR | 304-318 | 5.997 |
| GntR | 255-274 | 5.977 |
| IdnR | 229-244 | 5.940 |