| TF name | Position | PWM scan score |
| ArcA | 106-166 | 20.351 |
| PspF | 2-18 | 16.628 |
| FNR | 330-351 | 16.379 |
| OmpR | 332-351 | 16.018 |
| AgaR | 118-141 | 15.979 |
| PhoP | 149-165 | 14.709 |
| Fur | 9-23 | 14.552 |
| MetR | 332-355 | 14.270 |
| NagC | 333-355 | 14.152 |
| H-NS | 333-347 | 14.065 |
| OxyR | 66-110 | 13.645 |
| IHF | 330-342 | 13.536 |
| SoxS | 65-82 | 13.516 |
| GadE | 334-353 | 12.995 |
| CysB | 336-377 | 12.989 |
| CRP | 335-356 | 12.926 |
| GcvA | 152-180 | 12.883 |
| UlaR | 198-217 | 12.751 |
| TyrR | 327-348 | 12.728 |
| CytR | 121-160 | 12.307 |
| ArgR | 201-216 | 12.067 |
| Mlc | 122-144 | 11.824 |
| MelR | 139-156 | 11.578 |
| CueR | 103-121 | 11.459 |
| Rob | 69-89 | 11.406 |
| AraC | 198-215 | 11.365 |
| Nac | 281-295 | 11.304 |
| FhlA | 21-60 | 11.234 |
| Fis | 285-305 | 11.187 |
| DeoR | 339-354 | 10.730 |
| RcsB | 286-299 | 10.677 |
| CpxR | 339-353 | 10.630 |
| TorR | 212-221 | 10.275 |
| NorR | 26-42 | 10.104 |
| XylR | 328-345 | 9.920 |
| Lrp | 240-251 | 9.731 |
| GlpR | 284-303 | 9.726 |
| ModE | 78-104 | 9.709 |
| ArgP | 200-212 | 9.612 |
| IdnR | 111-126 | 8.975 |
| Ada | 21-48 | 8.252 |
| MarA | 205-225 | 8.230 |
| PurR | 345-360 | 7.998 |
| FruR | 116-133 | 7.928 |
| NarL | 73-79 | 7.703 |
| DcuR | 316-370 | 7.542 |
| NarP | 246-252 | 7.423 |
| LexA | 366-385 | 7.395 |
| PhoB | 152-171 | 7.255 |
| DnaA | 332-340 | 7.006 |
| GntR | 237-256 | 6.951 |
| FadR | 41-57 | 6.869 |
| RhaS | 9-25 | 6.858 |
| MetJ | 152-159 | 6.061 |
| UxuR | 16-33 | 5.549 |