| TF name | Position | PWM scan score |
| ArcA | 203-263 | 29.501 |
| CysB | 203-244 | 24.605 |
| Ada | 333-360 | 23.166 |
| NagC | 131-153 | 17.748 |
| DcuR | 169-223 | 16.517 |
| ModE | 187-213 | 15.523 |
| Mlc | 375-397 | 15.433 |
| ArgR | 243-258 | 15.422 |
| RcsB | 245-258 | 15.396 |
| CytR | 215-254 | 15.369 |
| IHF | 132-144 | 15.311 |
| H-NS | 185-199 | 14.523 |
| OmpR | 236-255 | 13.975 |
| AgaR | 240-263 | 13.379 |
| FadR | 226-242 | 13.141 |
| Nac | 39-53 | 13.136 |
| XylR | 165-182 | 12.788 |
| CRP | 155-176 | 12.776 |
| LexA | 84-103 | 12.611 |
| FNR | 339-360 | 12.571 |
| PhoP | 246-262 | 12.532 |
| TrpR | 329-346 | 12.438 |
| TorR | 83-92 | 12.109 |
| SoxS | 364-381 | 11.371 |
| Lrp | 212-223 | 11.244 |
| MetR | 126-149 | 11.109 |
| CpxR | 9-23 | 10.920 |
| Fur | 6-20 | 10.890 |
| TyrR | 134-155 | 10.579 |
| MarA | 313-333 | 10.414 |
| UlaR | 327-346 | 10.406 |
| AraC | 210-227 | 10.227 |
| IdnR | 220-235 | 10.187 |
| MetJ | 370-377 | 10.148 |
| DeoR | 9-24 | 10.124 |
| GcvA | 210-238 | 9.965 |
| Fis | 80-100 | 9.845 |
| Rob | 58-78 | 9.744 |
| PhoB | 371-390 | 9.296 |
| ArgP | 276-288 | 8.729 |
| NorR | 28-44 | 8.499 |
| UxuR | 187-204 | 8.309 |
| OxyR | 24-68 | 8.186 |
| NarL | 387-393 | 8.131 |
| LacI | 357-377 | 7.986 |
| GadE | 323-342 | 7.853 |
| PspF | 382-398 | 7.650 |
| DnaA | 279-287 | 7.045 |
| MelR | 334-351 | 6.888 |
| GntR | 21-40 | 6.861 |
| NarP | 170-176 | 6.379 |
| NtrC | 236-252 | 6.046 |
| GlpR | 136-155 | 5.430 |