| TF name | Position | PWM scan score |
| ArcA | 337-397 | 16.536 |
| GcvA | 130-158 | 15.074 |
| H-NS | 254-268 | 14.602 |
| FNR | 116-137 | 14.426 |
| Fis | 115-135 | 13.518 |
| NagC | 377-399 | 13.183 |
| OmpR | 350-369 | 12.994 |
| Ada | 361-388 | 11.576 |
| GlpR | 256-275 | 11.469 |
| ArgP | 285-297 | 11.125 |
| IHF | 8-20 | 10.795 |
| SoxS | 251-268 | 10.315 |
| Nac | 15-29 | 10.228 |
| CRP | 166-187 | 10.092 |
| Lrp | 373-384 | 9.932 |
| ArgR | 5-20 | 9.724 |
| CpxR | 371-385 | 9.634 |
| GadE | 286-305 | 9.520 |
| XylR | 283-300 | 9.506 |
| AraC | 368-385 | 9.367 |
| RhaS | 23-39 | 9.101 |
| NarL | 326-332 | 8.951 |
| UlaR | 8-27 | 8.660 |
| Mlc | 377-399 | 8.548 |
| CytR | 91-130 | 8.517 |
| PhoB | 246-265 | 8.463 |
| NorR | 16-32 | 8.160 |
| NtrC | 311-327 | 7.954 |
| UxuR | 215-232 | 7.953 |
| GntR | 26-45 | 7.947 |
| GalS | 84-99 | 7.941 |
| GalR | 84-99 | 7.941 |
| Rob | 167-187 | 7.791 |
| MalT | 185-194 | 7.660 |
| RcsB | 286-299 | 7.621 |
| MelR | 351-368 | 7.522 |
| MetR | 362-385 | 7.450 |
| DeoR | 251-266 | 7.422 |
| PhoP | 250-266 | 7.371 |
| LexA | 375-394 | 7.317 |
| IdnR | 115-130 | 7.011 |
| CysB | 17-58 | 6.783 |
| MarA | 36-56 | 6.515 |
| AgaR | 285-308 | 6.421 |
| DnaA | 39-47 | 6.369 |
| TorR | 64-73 | 6.344 |
| PspF | 22-38 | 6.320 |
| OxyR | 8-52 | 5.812 |
| MetJ | 381-388 | 5.744 |
| Fur | 364-378 | 5.577 |
| CueR | 191-209 | 5.456 |
| NarP | 170-176 | 5.270 |
| ModE | 364-390 | 5.268 |