| TF name | Position | PWM scan score |
| ArcA | 287-347 | 29.632 |
| CysB | 341-382 | 20.495 |
| NagC | 360-382 | 19.748 |
| OmpR | 369-388 | 19.680 |
| H-NS | 84-98 | 17.462 |
| Fur | 368-382 | 17.402 |
| UxuR | 259-276 | 16.810 |
| CRP | 307-328 | 15.753 |
| Rob | 365-385 | 15.653 |
| DnaA | 149-157 | 15.034 |
| MetR | 223-246 | 14.704 |
| OxyR | 289-333 | 14.637 |
| Fis | 359-379 | 14.438 |
| FNR | 358-379 | 13.872 |
| GadE | 361-380 | 13.725 |
| TyrR | 266-287 | 13.718 |
| CpxR | 105-119 | 13.418 |
| PhoB | 365-384 | 12.959 |
| GcvA | 368-396 | 12.919 |
| PhoP | 364-380 | 12.502 |
| AgaR | 347-370 | 12.487 |
| AraC | 225-242 | 12.419 |
| PspF | 221-237 | 12.300 |
| Lrp | 335-346 | 12.296 |
| Nac | 1-15 | 12.204 |
| DcuR | 43-97 | 12.158 |
| UlaR | 108-127 | 12.076 |
| ModE | 259-285 | 11.981 |
| GntR | 357-376 | 11.957 |
| XylR | 255-272 | 11.917 |
| Ada | 291-318 | 11.603 |
| IHF | 303-315 | 11.546 |
| CytR | 356-395 | 11.403 |
| ArgP | 369-381 | 11.371 |
| GlpR | 359-378 | 11.045 |
| RcsB | 231-244 | 10.647 |
| MarA | 358-378 | 10.576 |
| ArgR | 366-381 | 9.998 |
| TorR | 248-257 | 9.719 |
| Mlc | 367-389 | 9.712 |
| DeoR | 360-375 | 9.704 |
| MetJ | 6-13 | 9.666 |
| SoxS | 83-100 | 9.379 |
| LexA | 130-149 | 8.755 |
| NorR | 367-383 | 8.721 |
| NarL | 337-343 | 8.131 |
| IdnR | 252-267 | 7.884 |
| MelR | 324-341 | 7.669 |
| NarP | 120-126 | 6.860 |
| FruR | 263-280 | 6.848 |
| LacI | 358-378 | 5.915 |
| RhaS | 120-136 | 5.847 |
| FadR | 126-142 | 5.580 |
| GalR | 254-269 | 5.289 |
| GalS | 254-269 | 5.289 |