| TF name | Position | PWM scan score |
| ArcA | 295-355 | 30.702 |
| OmpR | 372-391 | 21.961 |
| GcvA | 159-187 | 20.556 |
| NagC | 224-246 | 20.388 |
| CysB | 49-90 | 19.933 |
| Fis | 321-341 | 18.918 |
| CytR | 278-317 | 18.702 |
| Mlc | 217-239 | 18.237 |
| GadE | 171-190 | 18.079 |
| FNR | 294-315 | 17.711 |
| Fur | 82-96 | 16.887 |
| OxyR | 17-61 | 16.705 |
| CRP | 368-389 | 16.614 |
| TyrR | 44-65 | 16.481 |
| AraC | 44-61 | 16.067 |
| Rob | 172-192 | 15.891 |
| PhoB | 172-191 | 15.804 |
| MarA | 332-352 | 15.788 |
| SoxS | 170-187 | 15.259 |
| RcsB | 277-290 | 15.244 |
| PhoP | 10-26 | 14.807 |
| DcuR | 113-167 | 14.804 |
| IHF | 181-193 | 14.594 |
| H-NS | 306-320 | 14.356 |
| AgaR | 70-93 | 13.483 |
| Nac | 80-94 | 13.447 |
| Ada | 291-318 | 13.369 |
| CpxR | 304-318 | 13.302 |
| PspF | 368-384 | 13.022 |
| UxuR | 308-325 | 12.778 |
| MelR | 271-288 | 12.655 |
| Lrp | 306-317 | 12.123 |
| TorR | 43-52 | 12.035 |
| XylR | 217-234 | 12.022 |
| GlpR | 227-246 | 11.898 |
| MetR | 21-44 | 11.439 |
| UlaR | 23-42 | 11.393 |
| ArgR | 178-193 | 11.346 |
| DeoR | 302-317 | 11.016 |
| GntR | 221-240 | 10.525 |
| ArgP | 381-393 | 10.037 |
| IdnR | 45-60 | 9.838 |
| NorR | 343-359 | 9.765 |
| MetJ | 154-161 | 9.662 |
| NarL | 281-287 | 9.580 |
| ModE | 35-61 | 9.175 |
| FruR | 111-128 | 8.767 |
| FhlA | 221-260 | 8.643 |
| DnaA | 124-132 | 7.864 |
| FadR | 180-196 | 7.009 |
| MalT | 20-29 | 6.194 |
| RhaS | 114-130 | 6.035 |
| LexA | 154-173 | 5.940 |
| NarP | 35-41 | 5.632 |