| TF name | Position | PWM scan score |
| ArcA | 269-329 | 23.996 |
| CysB | 268-309 | 21.563 |
| Mlc | 184-206 | 19.889 |
| OmpR | 280-299 | 17.531 |
| GntR | 290-309 | 16.774 |
| CytR | 320-359 | 14.946 |
| UxuR | 308-325 | 14.819 |
| CRP | 182-203 | 14.717 |
| AraC | 299-316 | 14.134 |
| GadE | 280-299 | 13.649 |
| PspF | 19-35 | 12.948 |
| Ada | 160-187 | 12.942 |
| TyrR | 325-346 | 12.781 |
| DeoR | 186-201 | 12.745 |
| H-NS | 331-345 | 12.707 |
| GlpR | 136-155 | 12.695 |
| ModE | 86-112 | 12.519 |
| AgaR | 281-304 | 12.505 |
| ArgR | 325-340 | 12.451 |
| Nac | 281-295 | 12.394 |
| Rob | 329-349 | 12.307 |
| PhoB | 332-351 | 12.059 |
| GcvA | 289-317 | 12.027 |
| OxyR | 168-212 | 11.837 |
| SoxS | 317-334 | 11.837 |
| IHF | 269-281 | 11.579 |
| NagC | 280-302 | 11.537 |
| MetJ | 323-330 | 11.400 |
| FNR | 185-206 | 11.305 |
| IdnR | 275-290 | 11.265 |
| ArgP | 267-279 | 11.180 |
| PhoP | 279-295 | 11.170 |
| Fur | 173-187 | 11.088 |
| Lrp | 197-208 | 10.669 |
| NorR | 178-194 | 10.648 |
| MarA | 137-157 | 10.530 |
| Fis | 86-106 | 10.447 |
| RcsB | 326-339 | 10.212 |
| DnaA | 202-210 | 9.821 |
| NarL | 184-190 | 9.333 |
| MetR | 296-319 | 9.167 |
| RhaS | 218-234 | 9.006 |
| UlaR | 332-351 | 8.721 |
| CpxR | 339-353 | 8.672 |
| XylR | 327-344 | 8.441 |
| NtrC | 170-186 | 7.811 |
| LacI | 293-313 | 7.637 |
| NarP | 275-281 | 7.325 |
| TorR | 52-61 | 7.108 |
| GalS | 96-111 | 6.550 |
| GalR | 96-111 | 6.550 |
| FadR | 229-245 | 6.244 |
| MelR | 23-40 | 6.081 |
| DcuR | 236-290 | 5.504 |