| TF name | Position | PWM scan score |
| CysB | 317-358 | 24.210 |
| ArcA | 316-376 | 23.595 |
| OxyR | 308-352 | 22.460 |
| CytR | 312-351 | 18.207 |
| PspF | 334-350 | 17.296 |
| GlpR | 359-378 | 15.578 |
| DcuR | 204-258 | 15.186 |
| CRP | 316-337 | 15.023 |
| ModE | 308-334 | 14.734 |
| AgaR | 309-332 | 14.244 |
| Fis | 316-336 | 13.589 |
| FNR | 321-342 | 13.272 |
| MarA | 260-280 | 12.881 |
| UlaR | 161-180 | 12.583 |
| XylR | 358-375 | 12.151 |
| GadE | 350-369 | 12.103 |
| IHF | 316-328 | 11.636 |
| NorR | 336-352 | 11.192 |
| Mlc | 340-362 | 10.964 |
| TorR | 100-109 | 10.906 |
| CpxR | 8-22 | 10.771 |
| PhoP | 314-330 | 10.690 |
| TyrR | 331-352 | 10.640 |
| NagC | 314-336 | 10.341 |
| AraC | 316-333 | 10.287 |
| H-NS | 319-333 | 10.275 |
| Rob | 319-339 | 10.252 |
| IdnR | 372-387 | 10.214 |
| DnaA | 133-141 | 10.111 |
| MelR | 123-140 | 9.812 |
| OmpR | 314-333 | 9.718 |
| NarP | 351-357 | 9.680 |
| Lrp | 16-27 | 9.609 |
| Fur | 328-342 | 9.382 |
| NarL | 336-342 | 9.333 |
| ArgP | 15-27 | 9.302 |
| TrpR | 318-335 | 9.080 |
| FadR | 52-68 | 9.028 |
| FhlA | 344-383 | 8.924 |
| PhoB | 234-253 | 8.697 |
| DeoR | 356-371 | 8.641 |
| Nac | 81-95 | 8.174 |
| Ada | 307-334 | 7.913 |
| UxuR | 3-20 | 7.607 |
| GntR | 342-361 | 7.534 |
| RcsB | 314-327 | 7.239 |
| ArgR | 323-338 | 7.037 |
| SoxS | 310-327 | 7.017 |
| FruR | 198-215 | 6.966 |
| MalT | 197-206 | 6.672 |
| GcvA | 184-212 | 5.910 |
| MetJ | 185-192 | 5.763 |
| MetR | 291-314 | 5.601 |
| RhaS | 220-236 | 5.004 |