| TF name | Position | PWM scan score |
| ArcA | 91-151 | 25.602 |
| CytR | 103-142 | 22.847 |
| AgaR | 41-64 | 18.733 |
| PspF | 34-50 | 18.196 |
| FNR | 112-133 | 16.892 |
| CysB | 41-82 | 16.135 |
| Fis | 212-232 | 15.687 |
| CRP | 127-148 | 13.627 |
| PhoP | 123-139 | 13.422 |
| PhoB | 6-25 | 13.338 |
| IHF | 130-142 | 13.260 |
| UxuR | 38-55 | 12.687 |
| NagC | 115-137 | 12.565 |
| CpxR | 99-113 | 12.480 |
| Nac | 126-140 | 12.478 |
| XylR | 158-175 | 12.447 |
| H-NS | 381-395 | 12.167 |
| UlaR | 125-144 | 11.914 |
| IdnR | 93-108 | 11.829 |
| Lrp | 42-53 | 11.265 |
| Ada | 25-52 | 11.059 |
| LacI | 112-132 | 11.025 |
| SoxS | 112-129 | 10.914 |
| GcvA | 121-149 | 10.810 |
| Fur | 118-132 | 10.566 |
| Rob | 98-118 | 10.102 |
| DcuR | 24-78 | 10.077 |
| AraC | 130-147 | 9.957 |
| OxyR | 34-78 | 9.924 |
| MelR | 159-176 | 9.903 |
| Mlc | 319-341 | 9.867 |
| MetR | 92-115 | 9.801 |
| ArgR | 126-141 | 9.795 |
| TorR | 121-130 | 9.794 |
| RcsB | 125-138 | 9.526 |
| FhlA | 100-139 | 9.322 |
| DnaA | 291-299 | 9.272 |
| GntR | 366-385 | 8.947 |
| MarA | 338-358 | 8.760 |
| ModE | 281-307 | 8.744 |
| OmpR | 99-118 | 8.500 |
| GadE | 68-87 | 8.223 |
| RhaS | 194-210 | 8.093 |
| DeoR | 163-178 | 7.953 |
| NarL | 50-56 | 7.884 |
| FadR | 179-195 | 7.800 |
| ArgP | 169-181 | 7.588 |
| GlpR | 160-179 | 7.559 |
| TyrR | 12-33 | 7.381 |
| NtrC | 155-171 | 6.612 |
| NorR | 267-283 | 6.357 |
| TrpR | 99-116 | 6.144 |
| GalR | 216-231 | 6.108 |
| GalS | 216-231 | 6.108 |
| LexA | 216-235 | 5.576 |
| FruR | 91-108 | 5.150 |