| TF name | Position | PWM scan score |
| ArcA | 101-161 | 19.173 |
| CysB | 247-288 | 18.634 |
| ModE | 14-40 | 17.679 |
| FNR | 259-280 | 17.497 |
| Fis | 106-126 | 15.076 |
| MarA | 138-158 | 15.073 |
| RcsB | 176-189 | 14.599 |
| PhoB | 182-201 | 14.565 |
| TyrR | 105-126 | 14.219 |
| GcvA | 226-254 | 14.186 |
| UxuR | 102-119 | 13.570 |
| PhoP | 372-388 | 13.198 |
| OxyR | 190-234 | 13.141 |
| IHF | 117-129 | 12.726 |
| CytR | 357-396 | 12.292 |
| GlpR | 123-142 | 11.910 |
| TorR | 1-10 | 11.606 |
| LacI | 330-350 | 11.592 |
| CRP | 139-160 | 11.301 |
| Lrp | 122-133 | 11.100 |
| ArgP | 30-42 | 11.059 |
| DcuR | 112-166 | 10.893 |
| TrpR | 127-144 | 10.855 |
| MetR | 111-134 | 10.808 |
| NagC | 115-137 | 10.668 |
| AraC | 117-134 | 10.621 |
| UlaR | 265-284 | 10.551 |
| AgaR | 114-137 | 10.326 |
| CpxR | 373-387 | 10.143 |
| GntR | 195-214 | 10.133 |
| H-NS | 119-133 | 10.106 |
| Mlc | 106-128 | 10.086 |
| NorR | 118-134 | 9.943 |
| ArgR | 22-37 | 9.799 |
| GadE | 214-233 | 9.497 |
| OmpR | 374-393 | 9.291 |
| MelR | 170-187 | 9.241 |
| DeoR | 237-252 | 9.179 |
| Nac | 264-278 | 8.993 |
| SoxS | 210-227 | 8.953 |
| GalS | 135-150 | 8.825 |
| GalR | 135-150 | 8.825 |
| DnaA | 345-353 | 8.729 |
| FadR | 247-263 | 8.694 |
| PspF | 153-169 | 8.637 |
| MetJ | 365-372 | 8.201 |
| Rob | 173-193 | 8.095 |
| XylR | 171-188 | 8.056 |
| IdnR | 118-133 | 7.340 |
| NarL | 246-252 | 7.337 |
| RhaS | 344-360 | 7.329 |
| Fur | 182-196 | 6.615 |
| CueR | 321-339 | 6.366 |
| Ada | 214-241 | 5.710 |
| FruR | 97-114 | 5.127 |